Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C14
(478 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi... 39 3e-04
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy... 32 0.039
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism... 31 0.12
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 28 0.64
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 1.9
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc... 26 2.6
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 2.6
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 26 3.4
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 26 3.4
SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi... 26 3.4
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 25 4.5
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 25 4.5
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 25 5.9
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 7.9
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 7.9
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c... 25 7.9
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster... 25 7.9
>SPAC977.14c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 39.1 bits (87), Expect = 3e-04
Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 16/173 (9%)
Frame = +2
Query: 8 EETLPTLEKAIADGKCRYIGLAD---YDVSLMKDIFEESEVKISTILSHSKSTLFDNRLQ 178
EE + L + GK RYIG + Y +++ E+ + + + L+ +
Sbjct: 165 EEVMRALNDVVESGKVRYIGASTMRCYQFIELQNTAEKHGWHKFISMQNYHNLLYREEER 224
Query: 179 NYVNFFKRNGVGVINAAATGMGLLTNSGPQPWHPASSEV-------------KSICRRAA 319
+ + ++ GVG+I + GLLT S S+ K+I R
Sbjct: 225 EMIPYCQKTGVGLIPWSPLARGLLTRSIDANEETIRSKTDLYTRALEFGAGYKAILSRVE 284
Query: 320 EYCKEQNVELARLATWFTLNQPHIDTNICGFFNVQQFHDVVNVFTKGLTDHEM 478
E K+ NV +A LAT ++L++ D I G V++ D + L++ ++
Sbjct: 285 ELAKKYNVSMATLATAWSLHKG--DYPIVGISKVERLKDALAAVELKLSEEDI 335
>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 321
Score = 32.3 bits (70), Expect = 0.039
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +2
Query: 8 EETLPTLEKAIADGKCRYIGLADYDVSLMKDIFEESEVK 124
EET +EK + GK R+IGL++++ + ++ I + ++VK
Sbjct: 146 EETWKAMEKLLETGKVRHIGLSNFNDTNLERILKVAKVK 184
>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 30.7 bits (66), Expect = 0.12
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 8 EETLPTLEKAIADGKCRYIGLADYDVSLMKDIFEESEVK 124
EET +E+ + GK RYIG+++++ + + + ++VK
Sbjct: 145 EETWQAMEELLETGKVRYIGISNFNNEYLDRVLKIAKVK 183
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 28.3 bits (60), Expect = 0.64
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 95 KDIFEESEVKISTILSHSKSTLFDNRLQNYVNFFKRNGVGVI 220
K +FE+ ++ IL S S +F+N++ NFF+++ + VI
Sbjct: 445 KKLFEDWKITNMPILRDSVSNVFNNQVLCSSNFFQKDNLLVI 486
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 1.9
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -2
Query: 477 ISWSVRPFVKTFTTSWNCCTLKKPQMFVSMCG 382
+ W+ RP ++ F W C K+P + V G
Sbjct: 1166 VVWT-RPMIRLFCLVWRCLLAKEPVLLVGDTG 1196
>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 148
Score = 26.2 bits (55), Expect = 2.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 215 VINAAATGMGLLTNSGPQPWHPASSEVKSICRRAAEYCKE 334
VIN +G G + G P P + + + RRA E K+
Sbjct: 100 VINVLQSGYGKVLGKGRLPETPVIVQTRYVSRRAEEKIKQ 139
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 2.6
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = -1
Query: 208 TISFEKVDIILKAVIEQCRFRVGKDGGDLDFRFFKDVLHQRNIIISKADVSALSICNSLL 29
+++ EK++ + K+++ R KD D ++ ++ L + I + S LSICNS L
Sbjct: 719 SLALEKLNDLEKSLVLSER---SKDELDESYKSLQEQLASKKIEVQNVS-SQLSICNSQL 774
Query: 28 E 26
E
Sbjct: 775 E 775
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 3.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 475 LMVSKTLRENVHDVVELLHVEKTADVCVNVRLVESK 368
L+++ + V E++HV K AD+ + RL E K
Sbjct: 237 LLIAARMNNFRRSVREVVHVVKVADITIQKRLDEFK 272
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 25.8 bits (54), Expect = 3.4
Identities = 16/67 (23%), Positives = 37/67 (55%)
Frame = +2
Query: 11 ETLPTLEKAIADGKCRYIGLADYDVSLMKDIFEESEVKISTILSHSKSTLFDNRLQNYVN 190
E+ LEK + +GK R IG++++ ++++ +S KI ++ + F ++ Q V+
Sbjct: 119 ESWKALEKGVEEGKLRAIGVSNFGPHHIQELL-DSHPKIIPCVNQIELHPFCSQ-QKVVD 176
Query: 191 FFKRNGV 211
+ + G+
Sbjct: 177 YCESKGI 183
>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
27a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 215 VINAAATGMGLLTNSGPQPWHPASSEVKSICRRAAEYCKE 334
VIN +G G + G P P + + + RRA E K+
Sbjct: 100 VINVLQSGYGKVLGKGRLPDTPVIIQTRYVSRRAEEKIKQ 139
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 4.5
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = +2
Query: 185 VNFFKRNGVGVINAAATGMGLLTNSGPQPWHPASSEVKSICRRAAEYCKEQNVELARLAT 364
VN F + V A + GP + +C++ AEY K+ RL++
Sbjct: 508 VNSFDQEAAAVAMARIAAFKAEVDDGPDVLRWTDRMLIKLCQKFAEYRKDDPSSF-RLSS 566
Query: 365 WFTL 376
FTL
Sbjct: 567 QFTL 570
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 20 PTLEKAIADGKCRYIGLADYDVSLMKDIFEESEVKISTILS 142
P + +++ + Y+GL YD+S + + E+ E K++ +S
Sbjct: 507 PGAAEVVSELESGYVGLISYDLSNLPNSTEDPERKLAKPVS 547
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/41 (26%), Positives = 17/41 (41%)
Frame = -1
Query: 274 PRLRTTVCQQAHASCSCVDNAYTISFEKVDIILKAVIEQCR 152
P+L+ C +H + N F +V +K QCR
Sbjct: 213 PKLKNFFCSYSHRHETATSNKQVSCFREVPAWIKQCQSQCR 253
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 24.6 bits (51), Expect = 7.9
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 329 KEQNVELARLATWFTLNQPHIDTNICGFFNVQQFHDVVNVFTKGLTDHEM 478
+EQ +E ++ QP NI G F++ Q H +N T+H +
Sbjct: 795 REQLIEQTVISLISIAKQPVEQKNIAGQFDLPQVH-AMNTLKTIFTEHRL 843
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 24.6 bits (51), Expect = 7.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 259 TVCQQAHASCSCVDNAYTISFEKVDIILKAVI 164
T+C Q + S N Y I + VD +L A +
Sbjct: 532 TLCTQTYDQTSSTANRYLIFYACVDFLLAAEV 563
>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 334
Score = 24.6 bits (51), Expect = 7.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 8 EETLPTLEKAIADGKCRYIGLADYDVSLMKDIFEESEVKISTILSH 145
EET+ L++ + G R IGL + V +K S V+I+ I H
Sbjct: 132 EETMACLKEFVDSGDIRCIGLCEPSVEEIKR--AHSVVRIAAIEVH 175
>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 480
Score = 24.6 bits (51), Expect = 7.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 301 RLHFTASRVPRLRTTVCQQAHASC 230
++ T S +P CQ+AHA C
Sbjct: 23 KIRCTGSDIPGQPCLACQKAHADC 46
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,973,158
Number of Sequences: 5004
Number of extensions: 39383
Number of successful extensions: 132
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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