Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C14
(478 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0351 - 17829874-17830005,17830250-17830267,17830544-178306... 101 4e-22
12_01_0313 + 2388488-2388560,2389285-2389462,2390221-2390331,239... 30 1.1
01_05_0718 - 24575946-24576121,24576721-24576874,24576964-245770... 29 1.5
04_03_0438 + 15929220-15929453,15929564-15929764,15930874-159310... 28 3.4
03_06_0547 - 34656862-34657217,34657444-34657540 28 3.4
03_05_0833 - 28045442-28045881,28045961-28046063,28046172-280462... 28 3.4
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 3.4
10_07_0165 + 13740611-13740706,13741159-13741215,13741523-137416... 28 4.5
04_03_0447 + 16015043-16015489,16017358-16017530,16017906-160180... 28 4.5
10_08_0021 + 14217455-14217505,14217742-14217909,14219137-142193... 27 5.9
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054... 27 7.8
>12_02_0351 -
17829874-17830005,17830250-17830267,17830544-17830672,
17831037-17831336,17831447-17831675,17831762-17831989,
17832380-17832645
Length = 433
Score = 101 bits (241), Expect = 4e-22
Identities = 50/147 (34%), Positives = 84/147 (57%), Gaps = 1/147 (0%)
Frame = +2
Query: 11 ETLPTLEKAIADGKCRYIGLADYDVSLMKDIFEESEV-KISTILSHSKSTLFDNRLQNYV 187
ET+P L+K GK R+IG+ +S+ + ++ + ILS+ + D L + +
Sbjct: 245 ETIPVLQKIKESGKARFIGITGLPLSIYTYVLDQVPPGSVDVILSYCHYGINDTALVDLL 304
Query: 188 NFFKRNGVGVINAAATGMGLLTNSGPQPWHPASSEVKSICRRAAEYCKEQNVELARLATW 367
+ K GVGVI+A+ MGLLT++GP WHPA E+K CR AA++CK++ + +LA
Sbjct: 305 PYLKSKGVGVISASPLAMGLLTDNGPPEWHPAPKELKLACRAAADHCKKKGKNITKLAMQ 364
Query: 368 FTLNQPHIDTNICGFFNVQQFHDVVNV 448
++L I T + G + +Q + ++ V
Sbjct: 365 YSLMNNEISTVLVGMNSPEQDNLIMEV 391
>12_01_0313 +
2388488-2388560,2389285-2389462,2390221-2390331,
2391280-2391362,2391826-2392027,2392078-2392101,
2392234-2392408,2392482-2392683,2393897-2394036
Length = 395
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 59 YIGLADYDVSLMKDIFEESEVKISTILSHSKSTLFDNRLQNYVNF 193
++ +Y V KD+FEE + K IL H T+ ++ ++ NF
Sbjct: 268 FVAFRNYFVE--KDVFEEIDYKFGEILHHCSRTVGIRKIYHHYNF 310
>01_05_0718 -
24575946-24576121,24576721-24576874,24576964-24577060,
24577142-24577314,24577426-24577629,24577725-24577892,
24577938-24578084
Length = 372
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 8 EETLPTLEKAIADGKCRYIGLAD 76
E+T+ L+K + +GK RYIGL++
Sbjct: 171 EDTIGELKKLVEEGKVRYIGLSE 193
>04_03_0438 +
15929220-15929453,15929564-15929764,15930874-15931046,
15931131-15931233,15931763-15932107
Length = 351
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 8 EETLPTLEKAIADGKCRYIGLADYDVSLMK 97
E T+ L+K + +GK +YIGL++ S ++
Sbjct: 143 EVTIGELKKLVEEGKIKYIGLSEASASTIR 172
>03_06_0547 - 34656862-34657217,34657444-34657540
Length = 150
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 172 PSELCQLFQKKWCRRYQRSCNWHGPADKQWSSTVAPG*Q 288
P LCQ +++ R Y WH AD+ ++ AP Q
Sbjct: 108 PCALCQEYRELVARGYDPKLGWHLNADRAAAAGAAPAVQ 146
>03_05_0833 -
28045442-28045881,28045961-28046063,28046172-28046203,
28046299-28046516,28046606-28046721,28047757-28048000,
28048423-28048510,28048596-28048667,28048758-28048869,
28049047-28049115,28049627-28049685,28050067-28050325
Length = 603
Score = 28.3 bits (60), Expect = 3.4
Identities = 24/97 (24%), Positives = 43/97 (44%)
Frame = +2
Query: 101 IFEESEVKISTILSHSKSTLFDNRLQNYVNFFKRNGVGVINAAATGMGLLTNSGPQPWHP 280
IF + E K++T + + N L +YV K+ + +N + L + W
Sbjct: 164 IFPDGEGKVNT-----EGVAYYNNLIDYV--IKQGLIPYVNLNHYDLPLALQKKYEGW-- 214
Query: 281 ASSEVKSICRRAAEYCKEQNVELARLATWFTLNQPHI 391
S ++ + AE+C + + R+ WFT N+P I
Sbjct: 215 LSPKIVGVFSDYAEFCFKTYGD--RVKNWFTFNEPRI 249
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 98 PSSKKHHNQQGRCICTFHLQ*PSRVSAESPPR 3
P S++ H + GR +HL+ P A PPR
Sbjct: 156 PRSRRSHGKVGRWTRAYHLKVPPPPMAPQPPR 187
>10_07_0165 +
13740611-13740706,13741159-13741215,13741523-13741681,
13742315-13742398,13742496-13742567,13742810-13742881,
13743085-13743125,13743296-13743362,13744033-13744224,
13744314-13744403,13744742-13744849,13745089-13745154
Length = 367
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 290 EVKSICRRAAE-YCKEQNVELARLATWFTLNQPHIDTNICGFFNVQQFHDV 439
EVK++C +A E +E NV++ R + ++ HID N + V +F ++
Sbjct: 32 EVKTLCEKAKEILMEESNVQVIRFS---SIAHIHIDVNESRYICVPRFINI 79
>04_03_0447 +
16015043-16015489,16017358-16017530,16017906-16018008,
16018177-16018521
Length = 355
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 8 EETLPTLEKAIADGKCRYIGLADYDVSLMK 97
E T+ L+K + +GK +YIGL++ S ++
Sbjct: 147 EITMGELKKLVEEGKIKYIGLSEASASTIR 176
>10_08_0021 +
14217455-14217505,14217742-14217909,14219137-14219340,
14219429-14219601,14219970-14220066,14220183-14220336,
14222029-14222209,14222858-14222898,14223146-14223231,
14223282-14223389,14223538-14223579
Length = 434
Score = 27.5 bits (58), Expect = 5.9
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +2
Query: 8 EETLPTLEKAIADGKCRYIGLAD 76
EET+ L+K + +GK +++GL++
Sbjct: 139 EETMGELKKLVEEGKVKFVGLSE 161
>05_04_0028 +
17302359-17302445,17303887-17303952,17305415-17305489,
17305638-17305737,17305819-17305865,17305937-17305994,
17306161-17306210,17306417-17306473,17306561-17306703,
17306793-17306834,17307083-17307124,17308239-17308272,
17308342-17308443,17310373-17310652,17311202-17311332,
17311676-17311773,17312525-17312717
Length = 534
Score = 27.1 bits (57), Expect = 7.8
Identities = 24/76 (31%), Positives = 35/76 (46%)
Frame = +2
Query: 35 AIADGKCRYIGLADYDVSLMKDIFEESEVKISTILSHSKSTLFDNRLQNYVNFFKRNGVG 214
A AD K RY+G+ DY L+ + E +E+ + LS +T+ + V +G
Sbjct: 337 APADWKGRYLGIIDYSAILLW-VLENAEI-TAVALSAGSATVAGVGM-GAVGAVGVAALG 393
Query: 215 VINAAATGMGLLTNSG 262
I AA G GL G
Sbjct: 394 AIGAAVAG-GLTAEKG 408
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,706,294
Number of Sequences: 37544
Number of extensions: 290755
Number of successful extensions: 840
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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