Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C14
         (478 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46445| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   7e-15
SB_13378| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_23353| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_32978| Best HMM Match : GATA (HMM E-Value=5.5)                      29   2.6  
SB_59524| Best HMM Match : zf-UBP (HMM E-Value=6.8)                    28   3.4  
SB_1878| Best HMM Match : DUF1103 (HMM E-Value=0.56)                   28   4.5  
SB_35477| Best HMM Match : zf-TAZ (HMM E-Value=1.9)                    28   4.5  
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)                   28   4.5  
SB_40263| Best HMM Match : zf-TAZ (HMM E-Value=1.1)                    27   6.0  
SB_54646| Best HMM Match : WCCH (HMM E-Value=1.3)                      27   6.0  
SB_3870| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.0  
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)                   27   7.9  
SB_1725| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_46445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 77.0 bits (181), Expect = 7e-15
 Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
 Frame = +2

Query: 197 KRNGVGVINAAATGMGLLTNSGPQPWHPASSEVKSICRRAAEYCKEQNVELARLATWFTL 376
           K   VGVINA+   MGLL++ GP  WHPA+   +  CR AA YCK Q V++++LA  F+L
Sbjct: 101 KEQEVGVINASPISMGLLSDRGPPDWHPANENTREKCREAALYCKSQGVDISKLAMHFSL 160

Query: 377 NQPHIDTNICGFFNVQQFHDVVNVFTK-GLTDHE 475
           ++  I T +    +++     +++  +  LTD E
Sbjct: 161 SKEGIPTTLVSTASLENLQKNIDIVRQAALTDKE 194


>SB_13378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -1

Query: 355 TRQLHILLLAVFSSSTANRLHFTASRVPRLRTTVCQQAHASCSCVDNAYTISFEKVDIIL 176
           TRQL        S ST +RLH T+SR+    +   ++  A+ SC  N +    E+   I 
Sbjct: 15  TRQLTSEYQHCKSYSTVSRLHGTSSRLSNGLSRSVREQFANISCSANVFREFRERFSRIS 74

Query: 175 KAVIEQCRFRVGKDG 131
           +  +       G +G
Sbjct: 75  RTYVHMFESGTGSEG 89


>SB_23353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 680

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = -2

Query: 387 CGWLRVNHV---ARRANSTFCSLQYSAARRQIDFTSLLAGC 274
           CGWLR+ H     RR   T+C +     R Q + T L   C
Sbjct: 8   CGWLRIGHANTCGRRFLDTYCKVHLQRLRTQSE-TRLCRPC 47


>SB_32978| Best HMM Match : GATA (HMM E-Value=5.5)
          Length = 93

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = -2

Query: 387 CGWLRVNHV---ARRANSTFCSLQYSAARR 307
           CGWLR+ H    +RR   T+C +     R+
Sbjct: 8   CGWLRIGHANTCSRRCLDTYCKVHIQRLRK 37


>SB_59524| Best HMM Match : zf-UBP (HMM E-Value=6.8)
          Length = 202

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
 Frame = -2

Query: 387 CGWLRVNHV---ARRANSTFCSLQYSAARR 307
           CGWLR+ H     RR   T+C +     R+
Sbjct: 8   CGWLRIGHANTCGRRCLDTYCKVHLKRLRK 37


>SB_1878| Best HMM Match : DUF1103 (HMM E-Value=0.56)
          Length = 260

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -1

Query: 205 ISFEKVDIILKAVIEQCRFRVGKDGGDLDFRFFKDVLHQRNIIISK 68
           I+F  +  I K VI  CR RVGK+     FRF +        I SK
Sbjct: 9   ITFNYLHFIAKNVI--CRIRVGKEQATNSFRFHRSKDRGEQAIRSK 52


>SB_35477| Best HMM Match : zf-TAZ (HMM E-Value=1.9)
          Length = 163

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
 Frame = -2

Query: 387 CGWLRVNHV---ARRANSTFCSLQYSAARR 307
           CGW+++ H     RR   T+C L     R+
Sbjct: 75  CGWIKIGHANTCGRRCMDTYCKLHLQRLRK 104


>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
          Length = 801

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = -2

Query: 387 CGWLRVNHV---ARRANSTFCSLQYSAARRQIDF 295
           CGWLR+ H     RR   T+C +     R +  F
Sbjct: 8   CGWLRIGHANTCGRRCLDTYCMVHLQRLRYESAF 41


>SB_40263| Best HMM Match : zf-TAZ (HMM E-Value=1.1)
          Length = 1033

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = -2

Query: 420 TLKKPQMFVSMCGWLRVNHV---ARRANSTFCSLQYSAARR 307
           T+++       CGWL+V H     +R   T+C +     R+
Sbjct: 68  TIRRMNCGKDYCGWLKVGHANTCGQRCMDTYCKVHLQRVRK 108


>SB_54646| Best HMM Match : WCCH (HMM E-Value=1.3)
          Length = 744

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
 Frame = -2

Query: 387 CGWLRVNHV---ARRANSTFCSLQYSAARR 307
           CGWL++ H     RR   T+C +     R+
Sbjct: 8   CGWLKIGHANPCGRRCMDTYCKVHLQKLRK 37


>SB_3870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/67 (22%), Positives = 27/67 (40%)
 Frame = +2

Query: 2   HEEETLPTLEKAIADGKCRYIGLADYDVSLMKDIFEESEVKISTILSHSKSTLFDNRLQN 181
           HE  +L T+EK   D +       D D     +       +IS + ++ K   FD    +
Sbjct: 23  HEHNSLNTIEKTTDDSETEGNNSCDNDAWFFSNTLHFLATRISEMATYGKIDEFDRDSDS 82

Query: 182 YVNFFKR 202
           +  + +R
Sbjct: 83  WEQYIER 89


>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
          Length = 3035

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 193 FQKKWCRRYQRSC 231
           F + WCR YQR C
Sbjct: 377 FHENWCREYQRMC 389



 Score = 27.1 bits (57), Expect = 7.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 193  FQKKWCRRYQRSC 231
            F + WCR YQR+C
Sbjct: 2487 FLENWCREYQRTC 2499


>SB_1725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 215 VINAAATGMGLLTNSGPQPWH 277
           V N   TG G+LT   P  WH
Sbjct: 120 VYNQRCTGRGILTEPDPSAWH 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,362,397
Number of Sequences: 59808
Number of extensions: 317533
Number of successful extensions: 908
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)