Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C13
         (139 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    26   0.040
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    19   3.5  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    19   6.1  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 25.8 bits (54), Expect = 0.040
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 21  FSCYHCELRWVSSNQTFAHPRVLT 92
           + C HC +++  SNQ  AH  + T
Sbjct: 219 YGCEHCSMKFSDSNQLKAHVLIHT 242


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 7   GVFCFSRVIIAS*DGFLVTKRLHTRVCLHAINKNACHH 120
           G+F F  ++  S +  L+   LHT + +   +    HH
Sbjct: 152 GIFAFQVLMCTSMNFVLLIGDLHTSIYIIFFDMFYQHH 189


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 7/24 (29%), Positives = 10/24 (41%)
 Frame = +3

Query: 21  FSCYHCELRWVSSNQTFAHPRVLT 92
           F C +C  ++  S     H R  T
Sbjct: 80  FICKYCNRQFTKSYNLLIHERTHT 103


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,316
Number of Sequences: 336
Number of extensions: 517
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 26
effective length of database: 113,849
effective search space used:  2163131
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)