Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C13
         (139 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    23   4.2  
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    23   7.3  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    22   9.6  
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    22   9.6  

>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +3

Query: 30  YHCELRWVSSNQTFAHPRVL 89
           Y C + W  S   F  PR++
Sbjct: 722 YLCSIYWAGSRLCFVQPRII 741


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = +3

Query: 39  ELRWVSSNQTFAHPRVLTRN**KCLPSWRPY 131
           +  W SSN  +A P     N     P W  Y
Sbjct: 183 QTEWASSNMQWAKPHPAYENDRSWRPFWENY 213


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 18  FFSCYHCELRWVSSN 62
           + SC +CE+ +VS N
Sbjct: 710 YLSCTNCEMSYVSPN 724


>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 166

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 91 VSTRGCANVWLLETHLNS 38
          +S R C+N W    + NS
Sbjct: 16 ISLRNCSNTWTFVPYANS 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,181
Number of Sequences: 5004
Number of extensions: 7469
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 26
effective length of database: 2,232,374
effective search space used: 42415106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)