Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C13
         (139 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1307 + 29218055-29218159,29218249-29218362,29218448-292186...    26   4.8  

>06_03_1307 +
           29218055-29218159,29218249-29218362,29218448-29218660,
           29218967-29219457,29219653-29219752,29219835-29219894,
           29220055-29220147,29220270-29220368,29220484-29220804
          Length = 531

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 64  KRLHTRVCLHAINKNACHHGALT 132
           K L     LHAI +NA H  ALT
Sbjct: 41  KALQEETTLHAILENALHRAALT 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,913,967
Number of Sequences: 37544
Number of extensions: 48969
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 14,793,348
effective HSP length: 26
effective length of database: 13,817,204
effective search space used: 262526876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)