Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C13
         (139 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80847-7|AAO91744.1|  778|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U80847-6|AAK68190.1|  796|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U80847-5|AAK68189.1|  793|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF016684-11|AAB66215.1|  555|Caenorhabditis elegans Hypothetical...    25   9.7  

>U80847-7|AAO91744.1|  778|Caenorhabditis elegans Hypothetical
           protein C17H11.6c protein.
          Length = 778

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 27  CYHCELRWVSSNQT 68
           CYHC+  W  SNQT
Sbjct: 205 CYHCKREW-HSNQT 217


>U80847-6|AAK68190.1|  796|Caenorhabditis elegans Hypothetical
           protein C17H11.6b protein.
          Length = 796

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 27  CYHCELRWVSSNQT 68
           CYHC+  W  SNQT
Sbjct: 205 CYHCKREW-HSNQT 217


>U80847-5|AAK68189.1|  793|Caenorhabditis elegans Hypothetical
           protein C17H11.6a protein.
          Length = 793

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 27  CYHCELRWVSSNQT 68
           CYHC+  W  SNQT
Sbjct: 205 CYHCKREW-HSNQT 217


>AF016684-11|AAB66215.1|  555|Caenorhabditis elegans Hypothetical
           protein F45C12.5 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 89  KHTRVCKRLVTRNPS 45
           +H+ + +RLVTRNPS
Sbjct: 306 RHSSLSQRLVTRNPS 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,398,835
Number of Sequences: 27780
Number of extensions: 45560
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 12,740,198
effective HSP length: 26
effective length of database: 12,017,918
effective search space used: 228340442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)