Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C13
         (139 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25360.1 68415.m03035 zinc finger protein-related contains we...    25   9.2  

>At2g25360.1 68415.m03035 zinc finger protein-related contains weak
           similarity to zinc finger proteins and Pfam PF01485: IBR
           domain
          Length = 373

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 6   RCILFFSCYHCELRWVSSNQTFAHPRVLT 92
           RC   F CY CE+ W +  +T +   +LT
Sbjct: 272 RCGYQF-CYQCEVEWKNDQKTCSSGCLLT 299


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,138,603
Number of Sequences: 28952
Number of extensions: 38999
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 12,070,560
effective HSP length: 26
effective length of database: 11,317,808
effective search space used: 215038352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)