Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C12
         (501 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)           214   3e-56
At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) simi...   214   3e-56
At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Matc...   214   3e-56
At1g21870.1 68414.m02737 glucose-6-phosphate/phosphate transloca...    32   0.19 
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP...    28   3.1  
At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast ...    27   7.1  
At1g67850.2 68414.m07746 expressed protein contains Pfam profile...    27   7.1  
At1g67850.1 68414.m07745 expressed protein contains Pfam profile...    27   7.1  
At1g09070.1 68414.m01012 C2 domain-containing protein / src2-lik...    27   9.4  

>At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)
          Length = 152

 Score =  214 bits (522), Expect = 3e-56
 Identities = 95/151 (62%), Positives = 121/151 (80%)
 Frame = +2

Query: 47  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 226
           MSLV  ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 227 EEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 406
             E++ ++TI++NPRQ+KIPDWFLNRQKD  DGKYSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 407 RGMRHYWGLRVXXXXXXXXXXXXXXXXVSKK 499
           RG+RHYWGLRV                VSKK
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKK 151


>At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) similar
           to ribosomal protein S18 GI:38422 from [Homo sapiens]
          Length = 152

 Score =  214 bits (522), Expect = 3e-56
 Identities = 95/151 (62%), Positives = 121/151 (80%)
 Frame = +2

Query: 47  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 226
           MSLV  ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 227 EEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 406
             E++ ++TI++NPRQ+KIPDWFLNRQKD  DGKYSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 407 RGMRHYWGLRVXXXXXXXXXXXXXXXXVSKK 499
           RG+RHYWGLRV                VSKK
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKK 151


>At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Match
           to ribosomal S18 gene mRNA gb|Z28701, DNA gb|Z23165 from
           A. thaliana. ESTs gb|T21121, gb|Z17755, gb|R64776 and
           gb|R30430 come from this gene
          Length = 152

 Score =  214 bits (522), Expect = 3e-56
 Identities = 95/151 (62%), Positives = 121/151 (80%)
 Frame = +2

Query: 47  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 226
           MSLV  ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 227 EEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 406
             E++ ++TI++NPRQ+KIPDWFLNRQKD  DGKYSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 407 RGMRHYWGLRVXXXXXXXXXXXXXXXXVSKK 499
           RG+RHYWGLRV                VSKK
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKK 151


>At1g21870.1 68414.m02737 glucose-6-phosphate/phosphate
           translocator-related similar to glucose 6
           phosphate/phosphate translocators from Pisum sativum]
           GI:2997591, [Mesembryanthemum crystallinum] GI:9295277,
           [Solanum tuberosum] GI:2997593; contains Pfam profile
           PF00892: Integral membrane protein
          Length = 341

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = -1

Query: 324 PSTISFCLLRNQSGIL-YCLGFDMIVTIFSTSSSVHSPARLSRSISAFFNTMLEYRRP-T 151
           PS  S  ++   SG+L +CL F +   I ST++   + A   +   A F + + +R P +
Sbjct: 226 PSPWSALIILFNSGVLAFCLNFSIFYVIQSTTAVTFNVAGNLKVAVAVFVSWMIFRNPIS 285

Query: 150 PLIAVIANITL 118
           P+ AV   ITL
Sbjct: 286 PMNAVGCGITL 296


>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082]
          Length = 351

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 323 GKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 418
           G YS +   NLD+     L+R+KK+ A  G R
Sbjct: 26  GGYSVVVVDNLDNSSAVSLQRVKKLAAEHGER 57


>At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast
           (CS13) ribosomal protein S13 precursor, chloroplast
           Arabidopsis thaliana, PIR:S59594; identical to cDNA
           ribosomal protein S13 GI:1515106
          Length = 169

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +2

Query: 377 LERLKKIRAHRGMRHYWGL 433
           ++RLK+I+ +RG+RH  GL
Sbjct: 122 IKRLKEIQCYRGVRHIQGL 140


>At1g67850.2 68414.m07746 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 404

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 428 PSSD-AYPYEHGSSSAFPNLHEAWS 357
           PS+D +Y  E GS  A P  H+AWS
Sbjct: 53  PSNDLSYIEEKGSKIATPESHKAWS 77


>At1g67850.1 68414.m07745 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 404

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 428 PSSD-AYPYEHGSSSAFPNLHEAWS 357
           PS+D +Y  E GS  A P  H+AWS
Sbjct: 53  PSNDLSYIEEKGSKIATPESHKAWS 77


>At1g09070.1 68414.m01012 C2 domain-containing protein / src2-like
           protein, putative similar to cold-regulated gene SRC2
           [Glycine max] GI:2055230; contains Pfam profile PF00168:
           C2 domain; identical to cDNA  src2-like protein
           GI:3426059
          Length = 324

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 449 VDHGHADPSSDAYPYEHGSSSAFP 378
           +DH   D    AYP  HG+ SA+P
Sbjct: 154 MDHKTMDQPVTAYPPGHGAPSAYP 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,080,308
Number of Sequences: 28952
Number of extensions: 192827
Number of successful extensions: 633
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)