Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C11
         (395 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q93636 Cluster: Putative uncharacterized protein; n=3; ...    32   4.6  
UniRef50_A6F523 Cluster: DNA internalization-related competence ...    31   6.1  
UniRef50_A6DIZ8 Cluster: Putative uncharacterized protein; n=1; ...    31   6.1  
UniRef50_A2DQZ5 Cluster: Putative uncharacterized protein; n=1; ...    31   6.1  
UniRef50_Q12445 Cluster: Nucleoporin POM34; n=3; Saccharomyces c...    31   8.1  

>UniRef50_Q93636 Cluster: Putative uncharacterized protein; n=3;
            Caenorhabditis elegans|Rep: Putative uncharacterized
            protein - Caenorhabditis elegans
          Length = 1785

 Score = 31.9 bits (69), Expect = 4.6
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +1

Query: 91   RKYHYLP--TTSCWLRNNVKMHGRYILTKDHAQRVFSTEPSSHTYLYIRG*TP*SVTELF 264
            R++HY+P  T     +  ++ H +Y+    H +        SH+Y+ + G    S TE+F
Sbjct: 821  REHHYIPLKTEQVQSKTEIERHNQYVPMTTHKETKSFDTGRSHSYIPLGGNVEQSKTEIF 880


>UniRef50_A6F523 Cluster: DNA internalization-related competence
           protein ComEC/Rec2; n=1; Marinobacter algicola
           DG893|Rep: DNA internalization-related competence
           protein ComEC/Rec2 - Marinobacter algicola DG893
          Length = 793

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 212 WLDGSVLNTLCA*SFVKIYLPCIFTLFLNQHDVV-GK*WYFLSWNAVMYLVPT 57
           W+   V+  L   +FV ++LP    L +   DVV G  W  LSW A +  VPT
Sbjct: 420 WVSLVVMPLLALGAFVLVFLPAANALVIGVLDVVFGVLWQGLSWLANVDPVPT 472


>UniRef50_A6DIZ8 Cluster: Putative uncharacterized protein; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Putative
           uncharacterized protein - Lentisphaera araneosa HTCC2155
          Length = 355

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 239 RHKV*QNYSKHSPKTLFGHIPSNKFAFLMKEIPSPN 346
           +HK  + Y++H  K + G +  NKFA    ++ SPN
Sbjct: 184 KHKKYKKYARHIEKVVGGRLDQNKFAREQAQLRSPN 219


>UniRef50_A2DQZ5 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 664

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -2

Query: 187 PFARDLLSKYTCH---ASLHCSLTNMTWSVNNGISFLGMPSCI*YLHMT*YNSV 35
           PF  + +S Y  H    S +  + ++ W +N  +SF+ MP+ I ++H T +  V
Sbjct: 443 PFVENEVSMYIEHIIATSANHKIQSLVWFLNEVLSFIQMPNPIVFIHTTMFAGV 496


>UniRef50_Q12445 Cluster: Nucleoporin POM34; n=3; Saccharomyces
           cerevisiae|Rep: Nucleoporin POM34 - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 299

 Score = 31.1 bits (67), Expect = 8.1
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +2

Query: 257 NYSKHSPKTLFGHIPSNKFAFLM 325
           N S H+P T  G+IPS+K+A++M
Sbjct: 268 NNSPHTPVTRKGYIPSSKYAYMM 290


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 394,493,579
Number of Sequences: 1657284
Number of extensions: 7683940
Number of successful extensions: 16246
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16238
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16503508437
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)