Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C11
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    28   0.46 
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    26   2.4  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    26   2.4  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   2.4  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    25   3.2  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   4.3  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    24   7.4  
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    24   9.8  
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    24   9.8  

>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 9/36 (25%), Positives = 23/36 (63%)
 Frame = -1

Query: 173 SFVKIYLPCIFTLFLNQHDVVGK*WYFLSWNAVMYL 66
           SF  ++ PC+FT+ +  +  + +  +F  +N++++L
Sbjct: 223 SFFSLF-PCLFTILMKDYHNIAENGFFFGYNSIVWL 257


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 256 LSHFMASIHGCRDMCG 209
           L + M S+H CR+MCG
Sbjct: 423 LGNPMLSMHSCREMCG 438


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -3

Query: 258 FCHTLWRLSTDVEICVAGWLCTKYPLRVIFCQNIPAMHL 142
           F  T W+    V IC   W CT +    +F   I  + L
Sbjct: 444 FLQTSWQAQAMVAICGLSWACTLWIPYSLFSSEIGKLGL 482


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 315 ANLFDGMWPNKVLGECLE*FCHTLWRLSTDVEICVAGWL 199
           + +FD  W  KV  E  E   H L R   D ++C   W+
Sbjct: 12  SQIFDKSW--KVRFEAYESLLHALNRALDDSDVCFQPWI 48


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +1

Query: 94  KYHYLPTTSC 123
           +YHYLP+TSC
Sbjct: 383 QYHYLPSTSC 392


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +1

Query: 58  VGTKYMTAFQERKYHYLPTTSCWLRNNVKMHGRYILTKDHAQRVFSTEPSSHTYLYIR 231
           VGTK  + ++ ++ H LP+T        +  G   +  D   +  +   SSH   ++R
Sbjct: 92  VGTKSQSDYENQQSHNLPSTPSADAETQRNIGSLSVLDDTKSQYANYSSSSHVLWHLR 149


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +1

Query: 70  YMTAFQERKYHYLPTTSCWLRNNVKMHGRYILTKDHAQRVFSTEPSSHTYLYIRG 234
           Y+  FQ++K    PT          ++GR  L   H   +F+T  S     +I+G
Sbjct: 108 YVNEFQDKKLPLRPTL---------LYGRMHLPSQHLDAIFATRLSPWLLFFIQG 153


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 254 QNYSKHSPKTLFGHIPSNKFAFLMKEIPS 340
           Q  +K   K L+GH+PS+    L + IPS
Sbjct: 236 QEIAKEITKELYGHLPSSSLPPL-EAIPS 263


>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 102 LFTDHVMLVKEQCKDAW 152
           L  +H +L+KE  KD W
Sbjct: 101 LLLEHCILIKESKKDTW 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,693,581
Number of Sequences: 5004
Number of extensions: 35392
Number of successful extensions: 93
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)