Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C11
(395 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1192 - 11313934-11314221,11314296-11314413,11317220-11317371 30 0.59
11_01_0126 + 1021224-1021256,1021717-1022486,1022582-1022667,102... 29 1.8
02_05_0225 + 26951993-26952165,26953169-26953567,26953644-269537... 28 2.4
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235... 27 4.1
06_03_1183 + 28237467-28237612,28238035-28238089,28238216-282383... 27 7.2
04_03_0535 - 16850704-16853001,16854055-16854115,16854228-168543... 27 7.2
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 27 7.2
06_01_0985 - 7646772-7647451,7647957-7648107 26 9.6
06_01_0599 - 4327671-4330034 26 9.6
01_07_0025 + 40565296-40565497,40565591-40566075 26 9.6
>07_01_1192 - 11313934-11314221,11314296-11314413,11317220-11317371
Length = 185
Score = 30.3 bits (65), Expect = 0.59
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 93 EIPLFTDHVMLVKEQCKDAWQVYFDKR 173
E P F+DH+ +K CKD W F K+
Sbjct: 55 ERPRFSDHLEAIKFICKDFWSELFKKQ 81
>11_01_0126 +
1021224-1021256,1021717-1022486,1022582-1022667,
1024240-1024316,1025095-1025190,1025861-1026566,
1026732-1026775
Length = 603
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = -2
Query: 190 IPFARDLLSKYTCHASLHCSLTNMTWSVNNGISFLGMPSCI 68
+P + + K C+ +LH S+ ++W+ + S L +P +
Sbjct: 237 LPLFKSVARKLACNPNLHASVIGISWACISNRSHLTLPPAL 277
>02_05_0225 + 26951993-26952165,26953169-26953567,26953644-26953797,
26954069-26954240,26954494-26954567,26954667-26954763,
26954888-26955000,26955168-26955283,26955960-26956017,
26956512-26956664,26957377-26957460,26957579-26957734,
26958401-26958469,26959212-26959300,26959398-26959560,
26959740-26959874,26959950-26960055,26960143-26960237,
26960508-26960753,26961567-26961635,26961772-26961837,
26961838-26961983,26962348-26962449,26962752-26962899,
26964183-26964239,26964315-26964445,26964535-26964623,
26964694-26965007,26965084-26965176,26966504-26966578,
26966834-26966895,26967254-26967356,26967518-26967676,
26967790-26967930,26967981-26968084,26968146-26968260,
26969017-26969169,26969256-26969417
Length = 1646
Score = 28.3 bits (60), Expect = 2.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 257 NYSKHSPKTLFGHIPSNKFAFLMKEIPSP 343
+YS H PK F ++P +K + ++P P
Sbjct: 1087 DYSVHGPKAFFANMPLSKTLTMNIDVPEP 1115
>06_01_0324 -
2357432-2357724,2358042-2358105,2358321-2358404,
2358638-2358715,2359298-2359360,2359459-2359561,
2359675-2359800,2360212-2360258,2361284-2361388,
2361483-2361605,2361759-2361854,2362052-2362141,
2362759-2362815,2362899-2363028,2363613-2363708,
2363815-2363875,2364391-2364490
Length = 571
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -3
Query: 228 DVEICVAGWLCTKY---PLRVIFCQNIPAMHLYIVP 130
+V I +A WLC Y PL + +N MHL+I+P
Sbjct: 192 EVLIKLANWLCDNYLKDPLATLIVKN---MHLHILP 224
>06_03_1183 +
28237467-28237612,28238035-28238089,28238216-28238354,
28238433-28238487,28238578-28238646,28239338-28239560,
28239645-28239740,28240708-28240827,28240937-28241062,
28241369-28241524,28242706-28242828,28242913-28242980,
28243119-28243254,28243365-28243530,28243615-28243853
Length = 638
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 52 SCVGTKYMTAFQERKYHYLPTTSCWLRNNV 141
+C+ + +R HYL T +CW NV
Sbjct: 132 NCMSARLQLTISKRS-HYLVTFACWFSENV 160
>04_03_0535 -
16850704-16853001,16854055-16854115,16854228-16854323,
16854394-16854521,16855016-16855067,16855182-16855274,
16855473-16855590,16856456-16856609,16857512-16857643,
16859136-16859216,16859353-16859507,16860118-16860343,
16860423-16860507,16860593-16860689,16861785-16861949,
16862046-16862121,16863041-16863103,16863193-16863359,
16863495-16863669,16863743-16863835,16864694-16864810,
16865589-16865778,16866092-16866126
Length = 1618
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 228 PWIDAIKCDRTILNTLLRLC 287
P ID+ KC TI NTLL+ C
Sbjct: 169 PIIDSEKCPLTINNTLLQSC 188
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 81 IPRKEIPLFTDHVMLVKEQCKDAWQVYFDKRSRAKGI*YRAIQPHISLHPWI 236
IP + P +++ E+ + AW+ YFD S+ G R + + LH I
Sbjct: 1131 IPLHQFPSIPKEILMKLEKKELAWERYFDLSSQEIGELIRNPKMGMQLHKCI 1182
>06_01_0985 - 7646772-7647451,7647957-7648107
Length = 276
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 164 KIYLPCIFTLFLNQHD 117
KIY PCIF F N+++
Sbjct: 162 KIYTPCIFEYFQNEYE 177
>06_01_0599 - 4327671-4330034
Length = 787
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +1
Query: 157 YILTK-DHAQRVFSTEPSSHTYLY 225
++L++ DHA++VF T PS T L+
Sbjct: 160 FVLSRVDHARKVFDTVPSPDTVLW 183
>01_07_0025 + 40565296-40565497,40565591-40566075
Length = 228
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 88 ERKYHYLPTTSCWLR 132
ER + +LP TSCW R
Sbjct: 73 ERYFFHLPATSCWRR 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,499,127
Number of Sequences: 37544
Number of extensions: 210000
Number of successful extensions: 441
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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