Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C11
         (395 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.59 
SB_33766| Best HMM Match : DUF728 (HMM E-Value=4.5)                    29   1.4  
SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                28   3.2  
SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25)               27   4.2  
SB_57469| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_48117| Best HMM Match : LANC_like (HMM E-Value=2.3)                 27   5.5  
SB_52918| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_44854| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  

>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 288  NKVLGECLE*FCHTLWRLSTDVEICVAGWL 199
            N + GECL   C   WR   D  +C  GW+
Sbjct: 4280 NPLTGECL---CERNWRGKADCSVCSTGWI 4306


>SB_33766| Best HMM Match : DUF728 (HMM E-Value=4.5)
          Length = 209

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
 Frame = +1

Query: 28  Y*RLNYIMSCVGTKYMTAFQERKYHYLPTTSCWLRNNVKMHGRYILTKD-HAQRVF---- 192
           Y R+N +++    K +  FQE  YH +P+T       + + G  I  +D H   V     
Sbjct: 135 YARINTLLT-TADKVIKHFQEESYHLVPSTD----KRLYVEGSKIFAQDPHIPEVLVFPP 189

Query: 193 STEPSSHTYLYIRG 234
           ST+   HT LYI G
Sbjct: 190 STDLHDHT-LYING 202


>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 1240

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 94  KYHYLPTTSCWLRNNVKMHGRYILTKD 174
           ++ Y P TS W++ N + HG Y +  D
Sbjct: 844 QFDYNPATSGWIKANYEQHGFYRVNYD 870


>SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -2

Query: 163 KYTCHASLHCSLTNMTWSVNNGISFLGMPSCI*YLHMT*YNSVFNTITQH 14
           K  CH  LH      TW++  G+ F  +P    +L    Y  +F  + +H
Sbjct: 101 KLICHIRLHDMAYKNTWNIITGLLFALLPMATLFLC---YFKLFRAVRRH 147


>SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25)
          Length = 1595

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 337  WNLFHQKCKLV*WNVAEQSLRRVFRIVLSHFMASI 233
            W++  +  K++ W+V    L RVF + L H +  I
Sbjct: 927  WSIDRRSTKILEWDVKSYQLSRVFDVDLEHPIGKI 961


>SB_57469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 337 WNLFHQKCKLV*WNVAEQSLRRVFRIVLSHFMASI 233
           W++  +  K++ W+V    L RVF + L H +  I
Sbjct: 9   WSIDRRSTKILEWDVKSYQLSRVFDVDLEHPIGKI 43


>SB_48117| Best HMM Match : LANC_like (HMM E-Value=2.3)
          Length = 440

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 268 FRIVLSHFMASI-HGCRDMCGWMALY 194
           F+ VL   M +I HGCR + G+M LY
Sbjct: 94  FQSVLQKVMGNIDHGCRRVRGYMLLY 119


>SB_52918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 141 KDAWQVYFDKRSRAKGI*YRAIQPHISLHPWIDAIKCDRTILNTLL 278
           K AW  YFD + +  G  Y A +  ++    +D +  D  + NTLL
Sbjct: 131 KTAW--YFDDKYKTPGSSYEAFKLAVADPSVLDELSLDEEMKNTLL 174


>SB_44854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 890

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = +1

Query: 55  CVGTKYMTAFQERKYHYLPTTSCWLRNNVKMHGRYILTK-------DHAQRVF 192
           C     +T  Q+R    + +   W R+    +G+YI+TK       DH QRVF
Sbjct: 675 CTAIVMLTELQDRGQ--IESELYWPRDGCVRYGKYIVTKIDEEELDDHTQRVF 725


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,626,306
Number of Sequences: 59808
Number of extensions: 267476
Number of successful extensions: 629
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)