Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C11
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr...    32   0.17 
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr...    32   0.17 
Z30215-3|CAA82935.1|  325|Caenorhabditis elegans Hypothetical pr...    28   2.1  
AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical ...    28   2.1  
AL021492-14|CAA16388.2|  473|Caenorhabditis elegans Hypothetical...    27   4.9  
Z81107-5|CAB03232.1|  203|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical protein
            F29G6.3c protein.
          Length = 1453

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +1

Query: 91   RKYHYLP--TTSCWLRNNVKMHGRYILTKDHAQRVFSTEPSSHTYLYIRG*TP*SVTELF 264
            R++HY+P  T     +  ++ H +Y+    H +        SH+Y+ + G    S TE+F
Sbjct: 821  REHHYIPLKTEQVQSKTEIERHNQYVPMTTHKETKSFDTGRSHSYIPLGGNVEQSKTEIF 880


>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical protein
            F29G6.3b protein.
          Length = 1785

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +1

Query: 91   RKYHYLP--TTSCWLRNNVKMHGRYILTKDHAQRVFSTEPSSHTYLYIRG*TP*SVTELF 264
            R++HY+P  T     +  ++ H +Y+    H +        SH+Y+ + G    S TE+F
Sbjct: 821  REHHYIPLKTEQVQSKTEIERHNQYVPMTTHKETKSFDTGRSHSYIPLGGNVEQSKTEIF 880


>Z30215-3|CAA82935.1|  325|Caenorhabditis elegans Hypothetical
           protein F40F12.3 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 109 PTTSCWLRNNVKMHGRYILTKDHAQRVFSTEP 204
           P TSCWL  +++M  R    K H Q+  S EP
Sbjct: 67  PDTSCWLNASLQMLKRSGFNK-HLQQCISMEP 97


>AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical
           protein Y40C7B.1 protein.
          Length = 916

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 178 RDLLSKYTCHASLHCSLTNMTWSVNNGIS 92
           R++++   C    H  L++ TWS NN I+
Sbjct: 27  REMINNKKCGYGTHTKLSSKTWSTNNKIT 55


>AL021492-14|CAA16388.2|  473|Caenorhabditis elegans Hypothetical
           protein Y45F10D.13a protein.
          Length = 473

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 93  EIPLFTDHVMLVKEQCKDAWQVYFDKRSRAKGI 191
           E+ L+T+ ++ V E+C D W +    R+   GI
Sbjct: 432 ELQLYTNDIIFVVEKCDDGWFIGTSLRTGDFGI 464


>Z81107-5|CAB03232.1|  203|Caenorhabditis elegans Hypothetical
           protein R07H5.7 protein.
          Length = 203

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +1

Query: 61  GTKYMTAFQERKYHYLPTTSCWLRNNVKMHGRYILTK---DHAQRVFSTEPSSHTYLYI 228
           G KY  A  ERK  ++  T  W    V++ G   + +    +A      EP+  T LY+
Sbjct: 143 GIKYQLAPVERKLVFIQDTYKWYDKEVEVEGGLDIQRIDGTNATITLPEEPAWSTILYV 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,301,685
Number of Sequences: 27780
Number of extensions: 194294
Number of successful extensions: 375
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)