Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C11
(395 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05000.1 68416.m00543 transport protein particle (TRAPP) comp... 30 0.49
At1g63730.1 68414.m07212 disease resistance protein (TIR-NBS-LRR... 28 2.6
At5g12890.1 68418.m01479 UDP-glucoronosyl/UDP-glucosyl transfera... 27 4.5
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P... 27 4.5
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 27 4.5
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243... 27 4.5
At2g14770.2 68415.m01669 Ulp1 protease family protein similar to... 27 4.5
At2g14770.1 68415.m01668 Ulp1 protease family protein similar to... 27 4.5
At3g28630.2 68416.m03574 expressed protein contains Pfam profil... 27 6.0
At3g28630.1 68416.m03573 expressed protein contains Pfam profil... 27 6.0
At1g79950.1 68414.m09344 helicase-related similar to BRCA1-bindi... 27 6.0
At1g20410.1 68414.m02545 expressed protein 27 6.0
At5g34970.1 68418.m04127 hypothetical protein similar to At5g368... 26 7.9
>At3g05000.1 68416.m00543 transport protein particle (TRAPP)
component Bet3 family protein similar to Transport
protein particle 33 kDa subunit (TRAPP 33 kDa subunit)
(Swiss-Prot:Q99394) [Saccharomyces cerevisiae]; contains
Pfam profile PF04051: Transport protein particle (TRAPP)
component, Bet3
Length = 173
Score = 30.3 bits (65), Expect = 0.49
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 93 EIPLFTDHVMLVKEQCKDAWQVYFDKR 173
E P F+DH+ +K CKD W F K+
Sbjct: 55 ERPRFSDHLEAIKFICKDFWSEVFKKQ 81
>At1g63730.1 68414.m07212 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 966
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 217 MCGWMALY*IPFARDLLSKYTCHASLHCSLTNMTWSVNNGISFLGMPSCI 68
+CG + AR L S+ + L C + N+ S N+G+ G+ C+
Sbjct: 213 ICGPSGIGKTTIARALHSRLSSSFQLTCFMENLKGSYNSGLDEYGLKLCL 262
>At5g12890.1 68418.m01479 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 488
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 175 DLLS-KYTCHASLHCSLTNMTWSVNNGISFLGMP 77
D+LS K TC HC ++ S+++G+ LG P
Sbjct: 362 DILSHKATCVFLSHCGWNSILESLSHGVPLLGWP 395
>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1463
Score = 27.1 bits (57), Expect = 4.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 111 DHVMLVKEQCKDAWQVYFDKR 173
D V+ VK +C+ W+ FD+R
Sbjct: 35 DDVISVKPECESVWKTLFDER 55
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 27.1 bits (57), Expect = 4.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 111 DHVMLVKEQCKDAWQVYFDKR 173
D V+ VK +C+ W+ FD+R
Sbjct: 171 DDVISVKPECESVWKTLFDER 191
>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886, At4g03300
Length = 1113
Score = 27.1 bits (57), Expect = 4.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 111 DHVMLVKEQCKDAWQVYFDKR 173
D V+ VK +C+ W+ FD+R
Sbjct: 171 DDVISVKPECESVWKTLFDER 191
>At2g14770.2 68415.m01669 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
At1g52020, At3g24390, At4g05280, At1g25886, At4g03300;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1158
Score = 27.1 bits (57), Expect = 4.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 111 DHVMLVKEQCKDAWQVYFDKR 173
D V+ VK +C+ W+ FD+R
Sbjct: 171 DDVISVKPECQSVWKTLFDER 191
>At2g14770.1 68415.m01668 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
At1g52020, At3g24390, At4g05280, At1g25886, At4g03300;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1139
Score = 27.1 bits (57), Expect = 4.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 111 DHVMLVKEQCKDAWQVYFDKR 173
D V+ VK +C+ W+ FD+R
Sbjct: 171 DDVISVKPECQSVWKTLFDER 191
>At3g28630.2 68416.m03574 expressed protein contains Pfam profile:
PF04601 protein of unknown function (DUF569
Length = 303
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 231 TDVEICVAGWLCTK-YPLRVIFCQNIPAMHLYIVP*PT 121
+D+ IC L K YPLR+ N MH+ ++P P+
Sbjct: 258 SDISICSKNPLNGKLYPLRLHLPPNNTKMHVVLIPSPS 295
>At3g28630.1 68416.m03573 expressed protein contains Pfam profile:
PF04601 protein of unknown function (DUF569
Length = 335
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 231 TDVEICVAGWLCTK-YPLRVIFCQNIPAMHLYIVP*PT 121
+D+ IC L K YPLR+ N MH+ ++P P+
Sbjct: 290 SDISICSKNPLNGKLYPLRLHLPPNNTKMHVVLIPSPS 327
>At1g79950.1 68414.m09344 helicase-related similar to BRCA1-binding
helicase-like protein BACH1 (GI:13661819) Homo
sapiens].; contains similarity to helicase-like protein
NHL GI:6969265 from (Homo sapiens)
Length = 1040
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 118 SCWLRNNVKMHGRYILTKDHAQRVFSTEPSS 210
S W+R NVK + RY R F TE S+
Sbjct: 744 SLWIRPNVKCYSRYGEVISDLARFFRTERSN 774
>At1g20410.1 68414.m02545 expressed protein
Length = 504
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 191 NTLCA*SFVKIYLPCIFTLFLNQHDVVGK*WYF 93
N + SF K+Y PCIF++ N+ + YF
Sbjct: 241 NCISENSFEKVYEPCIFSVHCNRMPIFFSGRYF 273
>At5g34970.1 68418.m04127 hypothetical protein similar to At5g36850,
At1g27780, At2g05560, At3g42730, At1g52020, At2g14770,
At3g43390, At3g24390, At1g34740, At1g25886, At4g03300,
At4g05280
Length = 478
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 111 DHVMLVKEQCKDAWQVYFDKR 173
D V+ VK +C+ W FD+R
Sbjct: 171 DDVINVKPECESVWNTLFDER 191
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,645,563
Number of Sequences: 28952
Number of extensions: 175931
Number of successful extensions: 400
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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