Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C10
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    29   0.35 
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    28   0.81 
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    27   1.9  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    27   1.9  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    26   2.5  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   3.3  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    25   4.3  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    24   9.9  
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ...    24   9.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   9.9  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    24   9.9  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    24   9.9  

>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 29.1 bits (62), Expect = 0.35
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +1

Query: 187 VVKADYEVYDPKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPSSMTSFYVKKH 366
           V+K+    YD +GN +    +EIP  +K +  R  +    + F  E++   + S   K +
Sbjct: 142 VLKSKTLAYDGRGNYVVHQPSEIPTAIKALGDRPLYVEKFVPFSMEIAVMVVRSLDGKVY 201

Query: 367 A--KSDTIKRD 393
           A   ++TI++D
Sbjct: 202 AYPTTETIQKD 212


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 27.9 bits (59), Expect = 0.81
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
 Frame = +1

Query: 88  NESSCLTAETSDNFIVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNK--LPSNLAEIPD 261
           N S   T ET  +F   I +S++    +     ++   Y    P+ N   L S L+ +  
Sbjct: 23  NPSVPYTIETIVSFFQEIIHSISPDTFQLDIDDILYKIYSKIPPEENNDALFSKLSNLVS 82

Query: 262 FLKHIPTRKSFATHILYFLTELSPSSMTSFYVKKHAKSDTI 384
            LK   T     + ILYFL  LSP S +S  V  H   ++I
Sbjct: 83  RLKS-QTVIHNKSQILYFLYLLSPISQSSRDVSSHLLDESI 122


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
 Frame = -1

Query: 93  FIKVTPVIIKQWL------FARFPLLHFVESLLRASC 1
           F+ + PV+I  WL      +A  P L F+ESL  A+C
Sbjct: 103 FVMLLPVMIFGWLVSTGFMYALIPRLSFLESLAIAAC 139


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 22/66 (33%), Positives = 28/66 (42%)
 Frame = +1

Query: 157 WKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPS 336
           W  +  I +    ADY   DP   +L  N    P F+ H+  R+S   HI       SP 
Sbjct: 544 WIDRNLIRLCQHFADYRKEDPSSFRLLPNFTLYPQFIFHL--RRSPFLHIF----NNSPD 597

Query: 337 SMTSFY 354
             TSFY
Sbjct: 598 E-TSFY 602


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 179 RYQSSKLITKSMTRKVINYLQI*QKYLIFSNIFLRGN 289
           R +++++I K MTR+ ++Y     KY++  N  LR N
Sbjct: 3   RAENARIIQKPMTRRTVDYGSGLSKYIV--NRHLRSN 37


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 59  HCLIMTGVTLMNPVV*QRKRVIISLSRYITAWL 157
           H  I+   T    +V   +R+  S SRY++AWL
Sbjct: 620 HTNIVALQTYAKSIVSTSRRLYASTSRYVSAWL 652


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 94  SSCLTAETSDNFIVTIYNSLAWKVKKFIEIPVV 192
           SS   AET    I+TI NSL + V  FI  P +
Sbjct: 7   SSVAIAETRRQIILTIINSLVYLV-NFISCPSI 38


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 210 DFVISFDDWYLNEFLHFPSQA 148
           DF +S +D  +++FLH+P  A
Sbjct: 133 DFSLSREDKEIDDFLHYPLPA 153


>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 261

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 17/70 (24%), Positives = 28/70 (40%)
 Frame = +1

Query: 115 TSDNFIVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEIPDFLKHIPTRKSF 294
           TS   ++ +  SLA + +KF  +  V   Y   D  G K          F ++    K  
Sbjct: 174 TSKAGVIQLIKSLAVEWRKFARVNCVSPGYTTSDMTGGKFHKEWEPYTPFERN-GLAKEI 232

Query: 295 ATHILYFLTE 324
           A+  LY  ++
Sbjct: 233 ASAYLYLASD 242


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = +1

Query: 184  PVVKADYEVYDPKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTEL-----SPSSMTS 348
            P++  +  ++ PK  +L  NLAEI +   H  +  +F   + Y   E+     S    TS
Sbjct: 2081 PLLLRNNLIHTPKATELWENLAEIDN---HTASGAAFQRLLYYLALEIPNEDSSVLGWTS 2137

Query: 349  FYVKKH 366
              V KH
Sbjct: 2138 LKVSKH 2143


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 25  NKMKQGKSSKQPLFNYDRCHFNESSCLTAETSDNFIVTIYNS 150
           N +KQ + +K+ L++     F     +   T  NF +T+Y S
Sbjct: 446 NLIKQQEEAKKSLWSKRFSRFYYGHYVFVNTCHNFFLTLYQS 487


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 175 IEIPVVKADYEVYDPKGNKLPSNLAEIP 258
           IE  V +A  ++Y PKG+K+     EIP
Sbjct: 261 IEEKVDEASLDLYTPKGHKIVFPNNEIP 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,728,723
Number of Sequences: 5004
Number of extensions: 33538
Number of successful extensions: 97
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)