Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C10
(465 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 41 4e-04
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 39 0.002
03_06_0221 + 32458867-32459149,32460271-32460386,32460461-324608... 29 1.4
11_04_0096 + 13435988-13436803,13436880-13437053,13437673-134378... 27 7.4
06_03_1471 + 30374988-30375959 27 7.4
11_05_0071 - 18821475-18821609,18821691-18822065,18822142-188226... 27 9.8
05_06_0249 + 26678486-26679270,26679330-26679891,26679930-266800... 27 9.8
>11_05_0014 +
18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 41.1 bits (92), Expect = 4e-04
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +1
Query: 58 PLFNYDRCHFNESSCLTAETSDNFIVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNKLP 237
PL N C +E + + +V +YNSL WK + + IPV+ V+D +G ++
Sbjct: 441 PLLNITYCPPSE---MDLSQGKSLVVLVYNSLGWKREDVLRIPVISDSIVVHDSEGREVE 497
Query: 238 SNLAEI 255
S L I
Sbjct: 498 SQLLPI 503
>10_01_0232 +
2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +1
Query: 43 KSSKQPLFNYDRCHFNESSCLTAETSDNFIVTIYNSLAWKVKKFIEIPVVKADYEVYDPK 222
K S+ L N C E +A++ ++ +YN L W+ F+ +PV A+ V
Sbjct: 469 KFSQCQLLNISYCPSTEEGISSAKS---LVIVVYNPLGWERSDFVRVPVNDANLIVKTSD 525
Query: 223 GNKLPSNLAEI 255
G L S L E+
Sbjct: 526 GTSLESQLVEV 536
>03_06_0221 +
32458867-32459149,32460271-32460386,32460461-32460807,
32461231-32461411,32461507-32461629,32461828-32462115,
32462536-32462688,32463068-32463169,32463260-32463313,
32463518-32463624,32463867-32463927,32464019-32464150,
32464245-32464382,32464459-32464539,32464635-32464715,
32465133-32465213,32465300-32465413
Length = 813
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +1
Query: 130 IVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEIPDFLKHIPTR 285
++ ++ +L + F E P ++ E Y +G K ++IPD+LKH+ TR
Sbjct: 262 LLKMFTALGMYSESF-EKPFLECTSEFYATEGVKYLQQ-SDIPDYLKHVETR 311
>11_04_0096 +
13435988-13436803,13436880-13437053,13437673-13437834,
13438548-13438690,13439059-13439134,13439231-13439403,
13439482-13439563,13439949-13440026,13440369-13440461,
13441026-13441187,13441225-13441530,13442265-13442369,
13443097-13443243
Length = 838
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +1
Query: 142 YNSLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFL 318
+++ W + I + DY DP L SN + P F+ ++ R F IL L
Sbjct: 602 FDATRWLDRSLIRLCSRFGDYRKDDPSSFSLHSNFSLFPQFMFNL-RRSQFVQEILALL 659
>06_03_1471 + 30374988-30375959
Length = 323
Score = 27.1 bits (57), Expect = 7.4
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 166 KKFIEIPVVKADYEV-YDPKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSP 333
KK+ ++ Y Y P G + SNL PD + T SF T +++T SP
Sbjct: 188 KKYYGRGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDAT-VSFKTAFWFWMTPQSP 243
>11_05_0071 -
18821475-18821609,18821691-18822065,18822142-18822674,
18822776-18823331,18824593-18824621,18824970-18825018
Length = 558
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = -1
Query: 96 GFIKVTPVIIKQ---WLFARFPLLHF 28
G I+ P+ I+ W FAR PL+HF
Sbjct: 235 GLIEQMPIQIQNDRTWWFARLPLIHF 260
>05_06_0249 +
26678486-26679270,26679330-26679891,26679930-26680049,
26680296-26680382
Length = 517
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 128 SLSRYITAWLGK*RNSLRYQSSKLITKSMTRKVINYLQI*QKYLIFSNIFL 280
SL +IT W G+ N + +Q SKL K + VI + ++ + F N +
Sbjct: 395 SLHIHITPWEGETCNDILWQPSKLQHKRLKELVIIGFEGTERQIYFVNFVI 445
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.131 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,821,354
Number of Sequences: 37544
Number of extensions: 168859
Number of successful extensions: 366
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -