Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C10
(465 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0) 47 9e-06
SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0) 47 9e-06
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13) 30 1.1
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56) 28 4.4
SB_56788| Best HMM Match : 7tm_1 (HMM E-Value=4e-32) 27 5.8
SB_27229| Best HMM Match : 7tm_1 (HMM E-Value=0.0014) 27 5.8
SB_17653| Best HMM Match : RCSD (HMM E-Value=5.1) 27 5.8
SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_8343| Best HMM Match : TPR_1 (HMM E-Value=3.1e-10) 27 7.7
>SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)
Length = 965
Score = 46.8 bits (106), Expect = 9e-06
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Frame = +1
Query: 28 KMKQGKSSKQPLFNYDRCHF-NESSCLTAETSDNFIVTIYNSLAWKVKKFIEIPVVKADY 204
K + K + P+F+ C+ N SSC + E S +F+V YN +A + +I +P V
Sbjct: 400 KSIKSKGNAPPVFS--SCNLLNVSSCPSTEDSKSFVVNAYNPIARDITSYIRVP-VNLPM 456
Query: 205 EVYDPKGNKLPSNLAEIPD---FLKHI-PTRKSFATHILYFLTELSPSSMTSFYV 357
VY+P+G + S L I L+ + S + + L F +L P S++V
Sbjct: 457 SVYNPQGAAIKSQLLPISQETMTLRRMQKLSASNSKYELIFKVKLPPLGFASYFV 511
>SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)
Length = 887
Score = 46.8 bits (106), Expect = 9e-06
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Frame = +1
Query: 28 KMKQGKSSKQPLFNYDRCHF-NESSCLTAETSDNFIVTIYNSLAWKVKKFIEIPVVKADY 204
K + K + P+F+ C+ N SSC + E S +F+V YN +A + +I +P V
Sbjct: 388 KSIKSKGNAPPVFS--SCNLLNVSSCPSTEDSKSFVVNAYNPIARDITSYIRVP-VNLPM 444
Query: 205 EVYDPKGNKLPSNLAEIPD---FLKHI-PTRKSFATHILYFLTELSPSSMTSFYV 357
VY+P+G + S L I L+ + S + + L F +L P S++V
Sbjct: 445 SVYNPQGAAIKSQLLPISQETMTLRRMQKLSASNSKYELIFKVKLPPLGFASYFV 499
>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3212
Score = 30.7 bits (66), Expect = 0.62
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 178 EIPVVKADYEVYDPKGNKLPSNLAEIPDFLKHIPTRKS 291
E+ ++K +V + NKL S L+E FLK + T K+
Sbjct: 1904 ELEIMKIRVDVLSSENNKLNSKLSETSTFLKDVKTSKT 1941
>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
Length = 3035
Score = 29.9 bits (64), Expect = 1.1
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Frame = +1
Query: 28 KMKQGKSSKQPLFNYDRCHFNESSCLTAETSDNFIV--TIYNSLAWKVKKFIEIPVVKAD 201
++ G + + N D C N + TS NF++ T+ NS+ ++ + +D
Sbjct: 1127 EISDGSPTPVVIHNQDFCADNSQFVYSVATSGNFLIDPTLDNSVLFEHCGESQEVSSASD 1186
Query: 202 YEVYDPKGNKLPSNLAEIPDFLKHIPT--RKSFATHILYFLTELSPSSMTS 348
+E+Y K+ L P+ + T R H L FL P + TS
Sbjct: 1187 FEIYSKLKGKVFFTLCGSPEGTFDVVTLRRGEINGHQLNFLRVQIPENRTS 1237
>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
Length = 1566
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Frame = +1
Query: 232 LPSNLAEIPDFLKHIPTR----KSFATHILYFLTEL--SPSSMTSFYVKKHA 369
LP+++ ++P KH+PT + TH+ F+T+L S + +F + HA
Sbjct: 1248 LPASVTQLPVSAKHLPTSVMHLHASVTHLPAFVTQLPVSVKHLPTFVMHLHA 1299
>SB_56788| Best HMM Match : 7tm_1 (HMM E-Value=4e-32)
Length = 524
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 79 CHFNESSCLTAETSDN 126
CHF+ SSCLT +T+ N
Sbjct: 121 CHFHLSSCLTGQTAMN 136
>SB_27229| Best HMM Match : 7tm_1 (HMM E-Value=0.0014)
Length = 309
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 79 CHFNESSCLTAETSDN 126
CHF+ SSCLT +T+ N
Sbjct: 113 CHFHLSSCLTGQTAMN 128
>SB_17653| Best HMM Match : RCSD (HMM E-Value=5.1)
Length = 281
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 327 KLSEKIQYMCGKRFPRRNM 271
KL++ +Q MC KRF RR++
Sbjct: 38 KLTDSVQKMCRKRFERRHL 56
>SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +1
Query: 220 KGNKLPS-NLAEIPDFLKHIP 279
KG ++P NL E+P+FLK +P
Sbjct: 570 KGARIPKENLPELPEFLKELP 590
>SB_8343| Best HMM Match : TPR_1 (HMM E-Value=3.1e-10)
Length = 225
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 76 RCHFNESSCLTAETSDNFIVTIYNSLAWKVKKFIEIPVVKADYE 207
RC+ CL+ S + + Y SLA + K F E P ++ DY+
Sbjct: 126 RCNPKHWLCLSQLCSVLYAIGDYASLALRDKIFSEEPYLQRDYQ 169
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.131 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,892,036
Number of Sequences: 59808
Number of extensions: 212859
Number of successful extensions: 468
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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