Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C10
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical pr...    31   0.54 
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ...    29   2.2  
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ...    29   2.2  
U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AL110485-30|CAI79250.1|  287|Caenorhabditis elegans Hypothetical...    28   3.8  
Z22178-6|CAA80158.2|  265|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z66523-6|CAA91415.1|  161|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U50300-7|AAC48106.1|  645|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF026215-10|AAB71320.2|  971|Caenorhabditis elegans Hypothetical...    27   8.8  

>U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical
           protein F55D10.1 protein.
          Length = 955

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
 Frame = +1

Query: 88  NESSCLTAETSDNFIVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEI--PD 261
           NE+ C     S  F V I+NS        I IP  +    + D   N L S + E    D
Sbjct: 465 NETICKPINGSSEFSVVIFNSNGRYFNGTIRIPYSQKTAVLRDAHKNVLESQIVETFQID 524

Query: 262 FLKHIPTRKSFATHILYFLTELSPSSMTSFYVKKHAKSDTIKRDTR 399
            LK    R  +  H+      + P   T+ +V+K +K + +  + R
Sbjct: 525 QLKD-TDRLPYEIHV---FVRVPPLGYTTVFVEKGSKPERVHFNNR 566


>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical
           protein W02C12.1 protein.
          Length = 1372

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +1

Query: 220 KGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPSSMTSFYVKK 363
           K NK PS +   P   KH+P  K     I+Y  +     S    + +K
Sbjct: 758 KPNKSPSTMFRYPQCTKHVPATKVVIVRIIYGSSPACTESSKEAFTQK 805


>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6b protein.
          Length = 1345

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +1

Query: 205 EVYDPKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPSSMTSFYVKKHAKS 375
           E Y   G +LP  +  + +  +  P       + L   T L P S+T+F++ ++ K+
Sbjct: 760 EEYRKDGKELPKQMKLLHESYERCPMLGDDVRYNLALKTFLPPKSITNFFINRNRKT 816


>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6a protein.
          Length = 1343

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +1

Query: 205 EVYDPKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPSSMTSFYVKKHAKS 375
           E Y   G +LP  +  + +  +  P       + L   T L P S+T+F++ ++ K+
Sbjct: 758 EEYRKDGKELPKQMKLLHESYERCPMLGDDVRYNLALKTFLPPKSITNFFINRNRKT 814


>U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical
           protein R03H4.6 protein.
          Length = 646

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 272 IFLRGNLLPHIYCIFSLSLALRV*HH 349
           +FL  +L  H++CI ++ LA  V HH
Sbjct: 306 LFLTASLRTHLFCILTILLASVVLHH 331


>AL110485-30|CAI79250.1|  287|Caenorhabditis elegans Hypothetical
           protein Y46G5A.39 protein.
          Length = 287

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 220 KGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPSSMTSFYVKKHAKSDTIK 387
           KG  +   L  I DFL+H+   K+    +LY+L E    S+     +K  K + +K
Sbjct: 94  KGRDVNRVLETILDFLEHLKINKNLDITVLYYL-EGDIQSIVELIARKTIKVNHLK 148


>Z22178-6|CAA80158.2|  265|Caenorhabditis elegans Hypothetical
           protein F54C8.6 protein.
          Length = 265

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 94  SSCLTAETSDNFIVTIYNSLAWKVKKFI 177
           S C T +  +NF++  Y SL  K ++F+
Sbjct: 52  SDCTTCKKIENFVMPYYESLKAKYQQFV 79


>Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical
           protein T08G11.3 protein.
          Length = 601

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +1

Query: 262 FLKHIPTRKSFATHILYFLTELSPSSMTSFYVKKHAKSDTIKRD 393
           F +H  +R SF  HI YF++ L  S+ +SF  K+H K D +  D
Sbjct: 28  FHQHCRSRFSFL-HI-YFVSSLHISTYSSFLNKRH-KCDHVDAD 68


>Z66523-6|CAA91415.1|  161|Caenorhabditis elegans Hypothetical
           protein M05D6.6 protein.
          Length = 161

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +1

Query: 229 KLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPSSMTSFYVKKHAKSDTIKRD 393
           KL  + A+IP ++ H    +      + F+   S    ++FY+ + A +  I RD
Sbjct: 97  KLYPSAADIPPYVHHGTMNRMHDRMRVVFIVTASLFFFSTFYIAERAMAQKIARD 151


>U50300-7|AAC48106.1|  645|Caenorhabditis elegans Hypothetical
           protein R03H4.5 protein.
          Length = 645

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 269 NIFLRGNLLPHIYCIFSLSLALRV*HHST*RNMLKV 376
           +IFL   +  +++CI S+ +A  V HH   +  LK+
Sbjct: 305 SIFLSATVKSYLFCILSIFIASIVLHHLFEKQYLKL 340


>AF026215-10|AAB71320.2|  971|Caenorhabditis elegans Hypothetical
           protein F09G2.1 protein.
          Length = 971

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 17/69 (24%), Positives = 26/69 (37%)
 Frame = +1

Query: 49  SKQPLFNYDRCHFNESSCLTAETSDNFIVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGN 228
           S  P +N D         L  +   N  V  YN+    + +F E  ++    E YD   +
Sbjct: 399 STSPCYNEDGTVHVPKVVLLTDFVSNVFVAQYNTTLLPLLEFYEFSIIAFTEEAYDGYKS 458

Query: 229 KLPSNLAEI 255
           KL     +I
Sbjct: 459 KLAMKAFQI 467


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.131    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,120,680
Number of Sequences: 27780
Number of extensions: 172492
Number of successful extensions: 397
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)