Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C09
(524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 108 3e-24
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 108 3e-24
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 91 4e-19
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645... 29 1.7
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497 28 5.3
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 27 7.0
04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410 27 9.2
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 27 9.2
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 108 bits (259), Expect = 3e-24
Identities = 48/75 (64%), Positives = 59/75 (78%)
Frame = +3
Query: 183 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 362
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 24 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 83
Query: 363 TAKGLFKILEKYRPE 407
A LFK+L KYRPE
Sbjct: 84 LATNLFKMLLKYRPE 98
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 108 bits (259), Expect = 3e-24
Identities = 48/75 (64%), Positives = 59/75 (78%)
Frame = +3
Query: 183 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 362
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 8 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 67
Query: 363 TAKGLFKILEKYRPE 407
A LFK+L KYRPE
Sbjct: 68 LATNLFKMLLKYRPE 82
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 91.5 bits (217), Expect = 4e-19
Identities = 42/75 (56%), Positives = 55/75 (73%)
Frame = +3
Query: 183 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 362
LFEKR K F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK
Sbjct: 25 LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKN 84
Query: 363 TAKGLFKILEKYRPE 407
++L++ + E
Sbjct: 85 LGCQKERLLKRAQAE 99
>11_03_0212 -
11761856-11762037,11762302-11762398,11763571-11764545,
11766172-11766263,11766450-11766510
Length = 468
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +3
Query: 204 NFAIGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP--INQFTQTLDK-TTAK 371
N +GQD + ++ +V+ Y I Q+ + +L RLK PP + TQ + K K
Sbjct: 352 NSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPPAWTAKHTQAVKKIKNCK 411
Query: 372 GLFKILEK 395
+L+K
Sbjct: 412 AAKDVLQK 419
>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
Length = 369
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 304 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKS 429
+++ +R S++ K QP C+RSW G+ +Q G++
Sbjct: 74 TMIEDLKRSSSADTMEQTK-QPLSCARSWSTCGKSSKQRGRN 114
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 227 PANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQ 334
P NQ P +Y+H AS G V ANQ
Sbjct: 317 PVNQGQFPPAVQTNLYNHAASSGGVREQVHLTQANQ 352
>04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410
Length = 1279
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 331 STSSPRH*IKPQPKVCS-RSWRNTGQKLRQSGKSV*RKPPKPRLLR 465
+ S+ H P P CS G+KL G + RKP K RLL+
Sbjct: 647 AVSATEHRPSPAPSFCSVEHSTEIGRKLVDHGVARSRKPSKLRLLK 692
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +2
Query: 167 EDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSA 322
ED + + E+ +L +W A S PF A P + V +SS A
Sbjct: 398 EDGRSKLTSESNQLTFWSDSQAGNGSSPFHHSAGGGMSPYYRDVVLSSSSKA 449
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,520,249
Number of Sequences: 37544
Number of extensions: 254847
Number of successful extensions: 777
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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