Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C09
         (524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   109   1e-24
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           109   1e-24

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  109 bits (262), Expect = 1e-24
 Identities = 54/114 (47%), Positives = 69/114 (60%)
 Frame = +3

Query: 183 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 362
           LFE+R K F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK 
Sbjct: 22  LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 81

Query: 363 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXNDEPPPKRPNTLRAGTNTVT 524
            A  LFKIL KYRPE                         K+P  ++ G N VT
Sbjct: 82  LATSLFKILLKYRPE-DKAAKKERLLNKAQAEAEGKPAESKKPIVVKYGLNHVT 134


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  109 bits (262), Expect = 1e-24
 Identities = 53/114 (46%), Positives = 69/114 (60%)
 Frame = +3

Query: 183 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 362
           LFE+R K F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK 
Sbjct: 23  LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 82

Query: 363 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXNDEPPPKRPNTLRAGTNTVT 524
            A  LFK+L KYRPE                         K+P  ++ G N VT
Sbjct: 83  LATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPS-ESKKPIVVKYGLNHVT 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,604,042
Number of Sequences: 28952
Number of extensions: 197745
Number of successful extensions: 536
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)