Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C08
         (262 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    23   5.1  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     23   5.1  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    23   5.1  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    23   5.1  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    23   8.8  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    23   8.8  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    23   8.8  

>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 60   TSIHHVHVSDQNPEIKHPS 4
            T  H V+    NPEIK PS
Sbjct: 1010 TGTHDVYRQTDNPEIKLPS 1028


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -1

Query: 157 NVDTKNQHLWKSMFNLSKFCYYFYRNTLIYF 65
           N + KN ++++    +S   +YF+ +   YF
Sbjct: 212 NNNKKNSYVFRLFDRVSSSTFYFFNSLFAYF 242


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 190 PISARFVHLATNVDTKNQHLWKSMFNL 110
           P S + +    ++ T N H W+S F L
Sbjct: 536 PSSGKILADGVDISTYNVHQWRSHFGL 562


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 11/51 (21%), Positives = 23/51 (45%)
 Frame = -1

Query: 217 FAHRFASAIPISARFVHLATNVDTKNQHLWKSMFNLSKFCYYFYRNTLIYF 65
           +A   A ++  +++F     +V    +  W  +FN     +YF  N  +Y+
Sbjct: 53  YAEAMADSLRYTSKFERKFEHVFQALKKYWSPVFNACCAFHYFEGNDDVYY 103


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 141 FLVSTLVARWTNLALIGIALANR*AKHKKWWA 236
           FL +T+   ++N   +G+   NR  K   W+A
Sbjct: 571 FLNTTIAGMYSNKEHVGVTDGNRRRKAAFWFA 602


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 141 INTYGNQCS 115
           +NTYGN+CS
Sbjct: 268 LNTYGNRCS 276


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 151 DTKNQHLWKSMFNLSKF 101
           DT+NQ LW S F+   F
Sbjct: 382 DTQNQLLWPSTFDDDNF 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,007,512
Number of Sequences: 5004
Number of extensions: 15372
Number of successful extensions: 45
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)