Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C08
         (262 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1571 - 27935756-27935950,27936048-27936199,27936294-279364...    28   1.2  
11_01_0678 - 5534879-5534883,5535430-5535529,5535638-5535799,553...    26   4.8  
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761...    25   6.3  
01_06_1022 + 33887089-33888411                                         25   6.3  
01_01_0897 + 7070539-7071522,7071949-7072620                           25   8.4  

>08_02_1571 -
           27935756-27935950,27936048-27936199,27936294-27936403,
           27936845-27937050,27937212-27937295,27937367-27937525,
           27937621-27937728,27938103-27938278,27938376-27938462,
           27938546-27938657,27938737-27938817,27938890-27938943,
           27939107-27939183,27939262-27939331,27939552-27939666,
           27939840-27939937,27940041-27940179,27940267-27940868,
           27941270-27941399,27941471-27941529
          Length = 937

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -1

Query: 166 LATNVDTKNQHLWKSMFNLSKFC 98
           LAT++D +N+HL KS+ NL K C
Sbjct: 573 LATSIDQQNKHL-KSVENLCKSC 594


>11_01_0678 -
           5534879-5534883,5535430-5535529,5535638-5535799,
           5536000-5536966,5537444-5537561,5538682-5538871,
           5538952-5539107,5539296-5540315
          Length = 905

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 2   HEGCLISGFWSLTC 43
           +E CL+S FW+L C
Sbjct: 362 NEWCLLSNFWALAC 375


>05_03_0619 +
           16274255-16274396,16274775-16274848,16275111-16276139,
           16276484-16276702,16277228-16277250,16277482-16277606,
           16279480-16279670,16280202-16280360,16281359-16281598
          Length = 733

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 135 C*FLVSTLVARWTNLALIGIALA 203
           C    S +VA W+ L L+G+ LA
Sbjct: 687 CEIQASRVVAEWSGLQLVGLTLA 709


>01_06_1022 + 33887089-33888411
          Length = 440

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/58 (24%), Positives = 23/58 (39%)
 Frame = -1

Query: 259 ETTDVDPRAHHFLCFAHRFASAIPISARFVHLATNVDTKNQHLWKSMFNLSKFCYYFY 86
           +T   +P  HH+ C    +A A  +   +  + T     N  +W S+    K    FY
Sbjct: 310 DTYGFEPTIHHYGCIVDLYAKAGKLEDAYEVIKTMRMEPNIIIWTSLLAACKKFKNFY 367


>01_01_0897 + 7070539-7071522,7071949-7072620
          Length = 551

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 150 STLVARWTNLALIGIALANR*AKHKKWWALGSTSVVS 260
           +T +  WT   LI    A R A+++ W  +G+TS V+
Sbjct: 349 TTTMMAWTMAELINHPRAMRKAQNEIWAVVGNTSHVT 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,643,022
Number of Sequences: 37544
Number of extensions: 97424
Number of successful extensions: 206
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)