Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C08
         (262 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43570| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_45751| Best HMM Match : HlyIII (HMM E-Value=0.0006)                 26   5.5  
SB_14105| Best HMM Match : G-alpha (HMM E-Value=0)                     26   5.5  
SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.5  
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   7.3  
SB_3991| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   7.3  
SB_13709| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.7  

>SB_43570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = -1

Query: 148 TKNQH---LWKSMFNLSKFCYYFY 86
           T+NQ    LW+ +F   +FC +FY
Sbjct: 23  TRNQRIERLWRDLFRCCQFCQFFY 46


>SB_45751| Best HMM Match : HlyIII (HMM E-Value=0.0006)
          Length = 198

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = -1

Query: 253 TDVDPRAHHFLCFAHRFASAIPISARFVHLATNVDTKNQHLWKSMFNLSKFCYYFYRNTL 74
           +D DP  +  +CFA   AS + +S+   HL   +     H+     + +  C Y +  + 
Sbjct: 93  SDFDPWCYGLVCFAIGIASLMAMSSS-AHLINCMSLSAHHI-GFYLDYAAICVYSFSGSQ 150

Query: 73  IYF 65
            +F
Sbjct: 151 AFF 153


>SB_14105| Best HMM Match : G-alpha (HMM E-Value=0)
          Length = 320

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 152 DISSKVDESGANRNSASKPMSK 217
           D+S++ D+ G N NS+  P+ K
Sbjct: 113 DLSAETDDDGNNNNSSFTPLGK 134


>SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1675

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -1

Query: 250 DVDPRAHHFLCFAHRFASAIPISARFVHLATNVDTKNQHLWKSMFNLSKF 101
           +++   H   C A   A A   +  F+ + + V++KN+H ++   N+  F
Sbjct: 569 NIERNKHIIKCVAEACAFAAANALLFLVVESGVNSKNEHAYQLNGNVGNF 618


>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2248

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 146 SVDISSKVDESGANRNSASKPMS 214
           + D+SSKV + G++RN  +K  S
Sbjct: 856 NADMSSKVPDKGSDRNETAKVQS 878


>SB_3991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = -1

Query: 187 ISARFV--HLATNVDTKNQHL 131
           ISA FV  H+A  VDTK QH+
Sbjct: 21  ISAVFVWRHVAVRVDTKKQHV 41


>SB_13709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 190 PISARFVHLATNVDTKNQHLWKSMFNLSKFCYYFYRNTLIY 68
           P    F   + ++   N H+  S   LS+FCY+ +R   +Y
Sbjct: 102 PARFNFFFSSVHIPGCNNHIADS---LSRFCYHEFRRVALY 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,643,105
Number of Sequences: 59808
Number of extensions: 111117
Number of successful extensions: 226
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 16,821,457
effective HSP length: 63
effective length of database: 13,053,553
effective search space used: 300231719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)