Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C08
         (262 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49937-6|CAA90185.2|  453|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z81502-4|CAB04107.2|  357|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>Z49937-6|CAA90185.2|  453|Caenorhabditis elegans Hypothetical
           protein F14F3.3 protein.
          Length = 453

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 147 LRINTYGNQCSIYQSFVIIFTEIL*FTFKTSIHHVHVSDQNP 22
           L +N   +  ++ Q  +II   I+  TF+ +   VH SD+NP
Sbjct: 99  LPVNEVASHTNVIQ--LIITLRIIGITFEENDAWVHKSDENP 138


>Z81502-4|CAB04107.2|  357|Caenorhabditis elegans Hypothetical
           protein F14B6.4 protein.
          Length = 357

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 169 HLATNVDTKNQHLWKSMFNLSKFCYYFYR 83
           H  T+ DT+    W +  N  +F  YFYR
Sbjct: 308 HSLTDEDTRGVLAWHTGKNDQQFLDYFYR 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,674,037
Number of Sequences: 27780
Number of extensions: 86826
Number of successful extensions: 203
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)