Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C08
         (262 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.20 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   1.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   1.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   1.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   1.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.20
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 193  IPISARFVHLATNVDTKNQHLW 128
            IP +ARF+ +ATN  T + + W
Sbjct: 1463 IPEAARFIEVATNSITLHLNAW 1484


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 1.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 173  ESGANRNSASKPMSKTQKM 229
            E GAN + + KP+S T+++
Sbjct: 1744 EKGANPDLSQKPVSTTEEL 1762


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 102 NFDKLNIDFHKC*FLVSTLVA 164
           N DKL   F KC  L++  VA
Sbjct: 457 NIDKLYTYFDKCDTLINNAVA 477


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 102 NFDKLNIDFHKC*FLVSTLVA 164
           N DKL   F KC  L++  VA
Sbjct: 457 NIDKLYTYFDKCDTLINNAVA 477


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
          ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 10 VLDFRILVADVHVVN 54
          ++DF I VAD++ +N
Sbjct: 12 LVDFNIFVADINSIN 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,281
Number of Sequences: 438
Number of extensions: 968
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4762122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)