Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C08
         (262 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f...    27   2.3  
At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein ...    25   5.2  
At4g17510.1 68417.m02620 ubiquitin carboxyl-terminal hydrolase, ...    25   9.1  
At3g21180.1 68416.m02677 calcium-transporting ATPase, plasma mem...    25   9.1  
At2g38250.1 68415.m04697 DNA-binding protein-related contains si...    25   9.1  
At1g76180.1 68414.m08846 dehydrin (ERD14) identical to SP|P42763...    25   9.1  
At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family pro...    25   9.1  

>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
           finger (C3HC4-type RING finger) family protein (BRCA1)
           contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
           domain, PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
          Length = 1276

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = -1

Query: 262 RETTDVDPRAHHFLCFAHRFASAIPISARFVHLATNVDTKNQHLWKSM 119
           RE   ++PR  HF C     A A  +   + ++ +     N  +W+++
Sbjct: 104 REEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTL 151


>At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 718

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 152 DISSKVDESGANRNSASKPMSKTQKMVGSRV 244
           DIS K DE+G++  S+    S+T  +  S V
Sbjct: 93  DISRKFDETGSHLQSSPSVASRTSTLPNSSV 123


>At4g17510.1 68417.m02620 ubiquitin carboxyl-terminal hydrolase,
           putative / ubiquitin thiolesterase, putative similar to
           SP|Q9JKB1 Ubiquitin carboxyl-terminal hydrolase isozyme
           L3 (EC 3.4.19.12) (UCH- L3) (Ubiquitin thiolesterase L3)
           {Mus musculus}; contains Pfam profile PF01088: Ubiquitin
           carboxyl-terminal hydrolase, family 1
          Length = 234

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 202 ASAIPISARFVHLATNVDTKNQHLW 128
           AS    S R++ L +N D  NQ+LW
Sbjct: 4   ASESSSSKRWLPLESNPDVMNQYLW 28


>At3g21180.1 68416.m02677 calcium-transporting ATPase, plasma
           membrane-type, putative / Ca2+-ATPase, putative (ACA9)
           identical to SP|Q9LU41 Potential calcium-transporting
           ATPase 9, plasma membrane-type (EC 3.6.3.8)
           (Ca(2+)-ATPase isoform 9) {Arabidopsis thaliana}
          Length = 1086

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 208 DEQNTKNGGLSGLRRW 255
           D  NTKN  +  LRRW
Sbjct: 46  DIDNTKNASVESLRRW 61


>At2g38250.1 68415.m04697 DNA-binding protein-related contains
          similarity to DNA-binding protein GI:170271 from
          [Nicotiana tabacum]
          Length = 289

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 51 HHVHVSDQNPEIKHP 7
          HH+H   Q PEI  P
Sbjct: 18 HHLHTQSQTPEIASP 32


>At1g76180.1 68414.m08846 dehydrin (ERD14) identical to SP|P42763
          Dehydrin ERD14 {Arabidopsis thaliana}
          Length = 185

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 45 VHVSDQNPEIKHPS 4
          VH+S+  PE+KH S
Sbjct: 56 VHISEPEPEVKHES 69


>At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family
           protein similar to  Ubiquitin-conjugating enzyme E2-16
           kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
           carrier protein) from {Schizosaccharomyces pombe}
           SP|P46595, {Caenorhabditis elegans} SP|P35129; contains
           Pfam profile PF00179: Ubiquitin-conjugating enzyme
          Length = 154

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 72  FTFKTSIHHVHVSDQ 28
           FTFKT I+H +++D+
Sbjct: 73  FTFKTPIYHPNINDE 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,326,688
Number of Sequences: 28952
Number of extensions: 80184
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 12,070,560
effective HSP length: 65
effective length of database: 10,188,680
effective search space used: 213962280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)