Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C07
         (462 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12125| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_5925| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.3  
SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)           28   4.3  
SB_54268| Best HMM Match : Vicilin_N (HMM E-Value=0.077)               28   4.3  
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_52197| Best HMM Match : TPR_2 (HMM E-Value=6.6e-10)                 27   10.0 

>SB_12125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 460 SFFLFFFYNISLITSATVASLCSRLR*LQTINV 362
           SF L F++ + LIT  +V   C +L  L+T ++
Sbjct: 43  SFALLFYFLVLLITGVSVTERCRKLLSLETTSI 75


>SB_5925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 460 SFFLFFFYNISLITSATVASLCSRLR*LQTINV 362
           SF L F++ + LIT  +V   C +L  L+T ++
Sbjct: 43  SFALLFYFLVLLITGVSVTERCRKLLSLETTSI 75


>SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 280 DIIVTPFTLLFLKLNRDSSHLGVYETSHQM 191
           D++V    LL L+L+ D+++  + +T HQM
Sbjct: 133 DVVVPALALLLLQLDGDATYSTLLDTLHQM 162


>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +2

Query: 131 EEIAIIPTKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERRDNYV 280
           + +  +P++ LRN++   +  L R +   Q   I  K +EE+ +   NY+
Sbjct: 456 KNLQAMPSEGLRNQLTLMSVALQRSIFTIQHDHIKAKKREEQEQMAQNYL 505


>SB_54268| Best HMM Match : Vicilin_N (HMM E-Value=0.077)
          Length = 371

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/52 (26%), Positives = 30/52 (57%)
 Frame = +2

Query: 200 RRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLD 355
           + L+  +++    +LQE ERE +   +   S+LE+  +++DSD +  +  L+
Sbjct: 289 KELLEQEMQHKEQRLQEWEREFQQKELEFSSSLERLRVDMDSDYRQQMGQLE 340


>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 83  YYTRLTLDFDTNKRICEEIAIIPTKPLRNK 172
           YY++LT D+D+ K    EI I+P+ P+  K
Sbjct: 14  YYSKLTHDYDSGKLQSPEI-ILPSVPVVTK 42


>SB_52197| Best HMM Match : TPR_2 (HMM E-Value=6.6e-10)
          Length = 536

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 242 LQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLK 346
           L  ++RE ++   P+     Q ++E D+D  D LK
Sbjct: 94  LMRQQREEQERLGPDSGLANQVLLEEDADKLDQLK 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,062,508
Number of Sequences: 59808
Number of extensions: 242514
Number of successful extensions: 621
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)