Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C07
(462 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B) 141 2e-34
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ... 139 1e-33
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ... 139 1e-33
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A) 137 3e-33
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi... 136 5e-33
At5g40530.2 68418.m04918 expressed protein contains Pfam profile... 32 0.22
At5g40530.1 68418.m04919 expressed protein contains Pfam profile... 32 0.22
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 29 2.0
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 29 2.0
At4g24450.1 68417.m03505 starch excess protein-related similar t... 28 2.7
At3g53030.1 68416.m05845 protein kinase family protein contains ... 27 6.2
At3g02810.1 68416.m00273 protein kinase family protein contains ... 27 6.2
At1g13630.1 68414.m01601 pentatricopeptide (PPR) repeat-containi... 27 8.2
>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
Length = 140
Score = 141 bits (341), Expect = 2e-34
Identities = 71/135 (52%), Positives = 93/135 (68%), Gaps = 4/135 (2%)
Frame = +2
Query: 26 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 205
MGRVRT YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 206 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 385
+ VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L S+ +G+
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120
Query: 386 QP----ATQGGYGGR 418
+P A +GGR
Sbjct: 121 EPQQAMAPIAAFGGR 135
>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 139 bits (336), Expect = 1e-33
Identities = 71/136 (52%), Positives = 92/136 (67%), Gaps = 4/136 (2%)
Frame = +2
Query: 26 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 205
MGRVRT YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 206 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 385
+ VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L S+ G+
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120
Query: 386 QP----ATQGGYGGRR 421
+P A +GG R
Sbjct: 121 EPQQAMAPIAAFGGGR 136
>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 139 bits (336), Expect = 1e-33
Identities = 71/136 (52%), Positives = 92/136 (67%), Gaps = 4/136 (2%)
Frame = +2
Query: 26 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 205
MGRVRT YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 206 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 385
+ VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L S+ G+
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120
Query: 386 QP----ATQGGYGGRR 421
+P A +GG R
Sbjct: 121 EPQQAMAPIAAFGGGR 136
>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
Length = 141
Score = 137 bits (332), Expect = 3e-33
Identities = 67/122 (54%), Positives = 86/122 (70%)
Frame = +2
Query: 26 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 205
MGRVRT YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 206 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 385
+ VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L S+ G+
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120
Query: 386 QP 391
P
Sbjct: 121 DP 122
>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
esculentum]
Length = 140
Score = 136 bits (330), Expect = 5e-33
Identities = 71/133 (53%), Positives = 91/133 (68%), Gaps = 2/133 (1%)
Frame = +2
Query: 26 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 205
MGRVRT YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 206 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQL- 382
+ VRGIS+KLQEEERERR ++VP+ SA++ D ++VD +T +ML L S+I G+
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120
Query: 383 -TQPATQGGYGGR 418
TQ A GR
Sbjct: 121 ETQQAMAPAVFGR 133
>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 301
Score = 31.9 bits (69), Expect = 0.22
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 390 GCVSCRPLMLLKSSIFNISLVSESTSMISCSRADTS 283
GC R +K+ +F+ LVS++ S+I+C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 287
Score = 31.9 bits (69), Expect = 0.22
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 390 GCVSCRPLMLLKSSIFNISLVSESTSMISCSRADTS 283
GC R +K+ +F+ LVS++ S+I+C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 28.7 bits (61), Expect = 2.0
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +2
Query: 95 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRLIHSQVR-GISIKLQEEERERRD 271
LTL +D ICEE A +K + + L + L ++R + ++LQ EE++ R
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR- 737
Query: 272 NYVPEVSALEQDI-IEVDSDTKDMLKMLD 355
+S L+ + EVD ++++ M D
Sbjct: 738 -----LSDLQSRVREEVDRQQQEIMSMPD 761
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 28.7 bits (61), Expect = 2.0
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +2
Query: 95 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRLIHSQVR-GISIKLQEEERERRD 271
LTL +D ICEE A +K + + L + L ++R + ++LQ EE++ R
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR- 737
Query: 272 NYVPEVSALEQDI-IEVDSDTKDMLKMLD 355
+S L+ + EVD ++++ M D
Sbjct: 738 -----LSDLQSRVREEVDRQQQEIMSMPD 761
>At4g24450.1 68417.m03505 starch excess protein-related similar to
SEX1 [Arabidopsis thaliana] GI:12044358
Length = 1284
Score = 28.3 bits (60), Expect = 2.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 187 GEPSNFVAKRLSRNDSNFLTYPFIGIEVKSKPSVVF 80
G +F+ K+ + ++YP I + SKPS++F
Sbjct: 1162 GRAMSFITKKTNLKSPTVISYPSKRIGLYSKPSIIF 1197
>At3g53030.1 68416.m05845 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 529
Score = 27.1 bits (57), Expect = 6.2
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +2
Query: 224 RGISIKLQEEERERRDNYVPEVSALEQDIIEVDSD-TKDMLKMLDFSNING 373
R +++K+Q+ + + + E++ L+Q I E D+D TK ++K+LD +G
Sbjct: 66 RYVALKVQKSAQHYTEAAMDEITILQQ-IAEGDTDDTKCVVKLLDHFKHSG 115
>At3g02810.1 68416.m00273 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 558
Score = 27.1 bits (57), Expect = 6.2
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 105 TSIPIKGYVRKLLSFLLSLFATKLLGSPP---I**DVSYTPRCEESLLSFKKRSV 260
T++PI + K +S LS + L+ PP D S T EES L +K SV
Sbjct: 353 TTVPILSFKDKSMSIALSRHDSNLVSPPPELATEDDKSSTSSGEESSLESEKESV 407
>At1g13630.1 68414.m01601 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 764
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 81 NTTLGLLLTSIPIKGYVRKLLSFLLSL 161
+ T +L+ S+ + GY+RK SF+ SL
Sbjct: 635 SATYNILIDSLCVYGYIRKADSFIYSL 661
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,167,663
Number of Sequences: 28952
Number of extensions: 174172
Number of successful extensions: 531
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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