Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C06
         (445 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0P6N7 Cluster: Plasma memebrane H+-ATPase; n=1; Planta...    34   1.6  
UniRef50_Q8JTZ7 Cluster: CD47-like protein; n=5; Capripoxvirus|R...    32   6.4  

>UniRef50_Q0P6N7 Cluster: Plasma memebrane H+-ATPase; n=1;
          Plantago major|Rep: Plasma memebrane H+-ATPase -
          Plantago major (Common plantain)
          Length = 106

 Score = 33.9 bits (74), Expect = 1.6
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 2  DPPGCRNSARGPFGIV 49
          DPPGCRNSARGP GI+
Sbjct: 15 DPPGCRNSARGP-GII 29


>UniRef50_Q8JTZ7 Cluster: CD47-like protein; n=5; Capripoxvirus|Rep:
           CD47-like protein - Lumpy skin disease virus NW-LW
          Length = 301

 Score = 31.9 bits (69), Expect = 6.4
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -2

Query: 297 KRGVLFQSFTYKFDMNFLISKTLTDTINYRQTNVIIHYDICI*YKVLYNHNLS*N 133
           K  ++F   T   + +F IS+    +INY + N  I  D  I + V YN N++ N
Sbjct: 8   KVNIIFLFLTIYINSSFSISENKVSSINYSKCNKTIVIDCNINHFVKYNENVTIN 62


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 330,301,602
Number of Sequences: 1657284
Number of extensions: 5100326
Number of successful extensions: 9374
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9370
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22761518346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)