SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C06
         (445 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30776| Best HMM Match : HLH (HMM E-Value=1.7e-13)                   29   1.7  
SB_18671| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_50032| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_38058| Best HMM Match : TP2 (HMM E-Value=0.072)                     28   4.0  
SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)                    27   5.3  
SB_53121| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_38326| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_44084| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_3953| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_30776| Best HMM Match : HLH (HMM E-Value=1.7e-13)
          Length = 1217

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 92  NKSFSTNTQTRGTMFYDKL*LYNTLYYIHI 181
           NKSF+ N QT+GTM  + L + N  + +++
Sbjct: 556 NKSFAVNVQTQGTMNTNSLPVINKSFAVNV 585


>SB_18671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +2

Query: 2  DPPGCRNSARGPF 40
          DPPGCRNS   PF
Sbjct: 17 DPPGCRNSMSNPF 29


>SB_50032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 47 RFRTGLVPNSCSPGD 3
          R+R  L+ NSCSPGD
Sbjct: 28 RYRVSLISNSCSPGD 42


>SB_38058| Best HMM Match : TP2 (HMM E-Value=0.072)
          Length = 399

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 267 YKFDMNFLISKTLTDTINYRQTNVIIHYDICI*YKVLYNHNLS*N 133
           YKF +N+ +S      +NY+   V ++Y + + YK   N+ +S N
Sbjct: 122 YKFPVNYKVSVNYKVPVNYK---VPVNYKVPVNYKFPVNYKVSVN 163


>SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)
          Length = 505

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 347 TTNGIGTSSNVTSRMKLSEEFYFNHLRINLI 255
           T   +GT +N+T R K+ EEF  ++ ++  I
Sbjct: 357 TVGYVGTITNITERKKIEEEFKKSYQKLESI 387


>SB_53121| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -2

Query: 39 NGPRAEFLQPGGS 1
          NG R EFLQPGGS
Sbjct: 61 NGQRIEFLQPGGS 73


>SB_38326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 2  DPPGCRNSARGPFGIVI 52
          DPPGCRNS R    I I
Sbjct: 17 DPPGCRNSIRSTTTITI 33


>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 8   PGCRNSARGPFGIVIPDHL 64
           PGCR+   GP   VI DH+
Sbjct: 775 PGCRDLLDGPINYVICDHM 793


>SB_44084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 77 KVLYKDGQELRFRTGLVPNSCSPGD 3
          ++L+K    L +   +  NSCSPGD
Sbjct: 19 RILFKATTSLVYYRSITSNSCSPGD 43


>SB_3953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 1  GSPGLQEFGTRPVRNRNS 54
          GSPGLQEF + P R  N+
Sbjct: 16 GSPGLQEFDSNPNRPSNA 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,222,873
Number of Sequences: 59808
Number of extensions: 161153
Number of successful extensions: 1784
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1784
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -