BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0002_C06 (445 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_30776| Best HMM Match : HLH (HMM E-Value=1.7e-13) 29 1.7 SB_18671| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3 SB_50032| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3 SB_38058| Best HMM Match : TP2 (HMM E-Value=0.072) 28 4.0 SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14) 27 5.3 SB_53121| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3 SB_38326| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0 SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2 SB_44084| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2 SB_3953| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2 >SB_30776| Best HMM Match : HLH (HMM E-Value=1.7e-13) Length = 1217 Score = 29.1 bits (62), Expect = 1.7 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = +2 Query: 92 NKSFSTNTQTRGTMFYDKL*LYNTLYYIHI 181 NKSF+ N QT+GTM + L + N + +++ Sbjct: 556 NKSFAVNVQTQGTMNTNSLPVINKSFAVNV 585 >SB_18671| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 54 Score = 28.7 bits (61), Expect = 2.3 Identities = 10/13 (76%), Positives = 10/13 (76%) Frame = +2 Query: 2 DPPGCRNSARGPF 40 DPPGCRNS PF Sbjct: 17 DPPGCRNSMSNPF 29 >SB_50032| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 158 Score = 28.7 bits (61), Expect = 2.3 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = -3 Query: 47 RFRTGLVPNSCSPGD 3 R+R L+ NSCSPGD Sbjct: 28 RYRVSLISNSCSPGD 42 >SB_38058| Best HMM Match : TP2 (HMM E-Value=0.072) Length = 399 Score = 27.9 bits (59), Expect = 4.0 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = -2 Query: 267 YKFDMNFLISKTLTDTINYRQTNVIIHYDICI*YKVLYNHNLS*N 133 YKF +N+ +S +NY+ V ++Y + + YK N+ +S N Sbjct: 122 YKFPVNYKVSVNYKVPVNYK---VPVNYKVPVNYKFPVNYKVSVN 163 >SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14) Length = 505 Score = 27.5 bits (58), Expect = 5.3 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = -3 Query: 347 TTNGIGTSSNVTSRMKLSEEFYFNHLRINLI 255 T +GT +N+T R K+ EEF ++ ++ I Sbjct: 357 TVGYVGTITNITERKKIEEEFKKSYQKLESI 387 >SB_53121| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 188 Score = 27.5 bits (58), Expect = 5.3 Identities = 11/13 (84%), Positives = 11/13 (84%) Frame = -2 Query: 39 NGPRAEFLQPGGS 1 NG R EFLQPGGS Sbjct: 61 NGQRIEFLQPGGS 73 >SB_38326| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 104 Score = 27.1 bits (57), Expect = 7.0 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = +2 Query: 2 DPPGCRNSARGPFGIVI 52 DPPGCRNS R I I Sbjct: 17 DPPGCRNSIRSTTTITI 33 >SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 940 Score = 26.6 bits (56), Expect = 9.2 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +2 Query: 8 PGCRNSARGPFGIVIPDHL 64 PGCR+ GP VI DH+ Sbjct: 775 PGCRDLLDGPINYVICDHM 793 >SB_44084| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 159 Score = 26.6 bits (56), Expect = 9.2 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = -3 Query: 77 KVLYKDGQELRFRTGLVPNSCSPGD 3 ++L+K L + + NSCSPGD Sbjct: 19 RILFKATTSLVYYRSITSNSCSPGD 43 >SB_3953| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 214 Score = 26.6 bits (56), Expect = 9.2 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +1 Query: 1 GSPGLQEFGTRPVRNRNS 54 GSPGLQEF + P R N+ Sbjct: 16 GSPGLQEFDSNPNRPSNA 33 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,222,873 Number of Sequences: 59808 Number of extensions: 161153 Number of successful extensions: 1784 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1747 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1784 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 871599479 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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