Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C06
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-5|CAB05765.2|  340|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AL023835-15|CAA19492.2|  520|Caenorhabditis elegans Hypothetical...    28   3.5  

>Z83233-5|CAB05765.2|  340|Caenorhabditis elegans Hypothetical
           protein K06B4.5 protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +2

Query: 107 TNTQTRGTMFYDKL*LYNTLYYIHIS**IITFVCL*FIVSVKVFEIKKFISNLYVND 277
           TN++T  T F + L ++NT   IH +   + F C+     V  F+ KK +  +Y ND
Sbjct: 273 TNSRTAPTRFTELLSVFNT---IHKTVNNMRFSCMMVQCFVPNFKFKKLMREVYFND 326


>AL023835-15|CAA19492.2|  520|Caenorhabditis elegans Hypothetical
           protein Y37A1B.9 protein.
          Length = 520

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 255 MNFLISKTLTDTINYRQTNVIIHYDICI*YKVLYNHNLS 139
           +  +ISKT  D + Y   ++  +   C+ Y++ Y  NL+
Sbjct: 428 LEHVISKTSDDVVMYENPSMYSNNQECLLYRITYQTNLN 466


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,709,416
Number of Sequences: 27780
Number of extensions: 127946
Number of successful extensions: 195
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)