Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C06
         (445 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11040.1 68418.m01290 expressed protein weak similarity to hy...    27   4.3  
At4g20160.1 68417.m02949 expressed protein ; expression supporte...    27   4.3  
At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identica...    27   7.5  
At1g50560.1 68414.m05673 cytochrome P450, putative similar to CY...    27   7.5  
At1g50520.1 68414.m05667 cytochrome P450 family protein similar ...    27   7.5  
At4g16835.1 68417.m02541 pentatricopeptide (PPR) repeat-containi...    26   10.0 
At3g20080.3 68416.m02543 cytochrome P450 family protein similar ...    26   10.0 
At3g20080.2 68416.m02542 cytochrome P450 family protein similar ...    26   10.0 
At3g20080.1 68416.m02541 cytochrome P450 family protein similar ...    26   10.0 

>At5g11040.1 68418.m01290 expressed protein weak similarity to
           hypercellular protein [Aspergillus nidulans] GI:9309269
          Length = 1186

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 231 LTDTINYRQTNVIIHY 184
           L D + YR TNVI+HY
Sbjct: 278 LEDEVRYRYTNVILHY 293


>At4g20160.1 68417.m02949 expressed protein ; expression supported by
            MPSS
          Length = 1188

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 121  RLCVCAEAFIINL*LKYFIKMVRNYDSE 38
            + CVC+E  + +L  +YF  + RN+ SE
Sbjct: 1158 KCCVCSEMPVDSLLYRYFCLIYRNFKSE 1185


>At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identical
           to auxin response factor 1 GI:2245378 from [Arabidopsis
           thaliana]
          Length = 665

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 5   PPGCRNSARGPFGIVIPDHLYK 70
           PPG  + A GP G V PD ++K
Sbjct: 376 PPGLPSPATGPSGPVTPDGVWK 397


>At1g50560.1 68414.m05673 cytochrome P450, putative similar to
           CYTOCHROME P450 93A3  (P450 CP5) (SP:O81973)  [Glycine
           max]
          Length = 519

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 300 LHPRSDIAARSDSVSCRSGGLYI 368
           LHP + I  R+ +  C+ GG YI
Sbjct: 376 LHPHTPILVRNATEGCKIGGYYI 398


>At1g50520.1 68414.m05667 cytochrome P450 family protein similar to
           CYTOCHROME P450 93A3 GB:O81973 from [Glycine max]
          Length = 533

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 300 LHPRSDIAARSDSVSCRSGGLYI 368
           LHP S +  R+ +  C+ GG YI
Sbjct: 375 LHPHSPMLVRNATKGCKIGGYYI 397


>At4g16835.1 68417.m02541 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 575

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 118 LCVCAEAFIINL*LKYFIKMVRNYDSE 38
           L  C  A ++N+ + YF  MVR+Y  E
Sbjct: 306 LLACNHAGLVNIGMAYFESMVRDYKVE 332


>At3g20080.3 68416.m02543 cytochrome P450 family protein similar to
           Cytochrome P450 93A1 (SP:Q42798)  {Glycine max};
           contains Pfam profile: PF00067 cytochrome P450
          Length = 386

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 300 LHPRSDIAARSDSVSCRSGGLYI 368
           LHP   + AR     CR GG Y+
Sbjct: 236 LHPPGPLFARFSQEGCRIGGFYV 258


>At3g20080.2 68416.m02542 cytochrome P450 family protein similar to
           Cytochrome P450 93A1 (SP:Q42798)  {Glycine max};
           contains Pfam profile: PF00067 cytochrome P450
          Length = 523

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 300 LHPRSDIAARSDSVSCRSGGLYI 368
           LHP   + AR     CR GG Y+
Sbjct: 373 LHPPGPLFARFSQEGCRIGGFYV 395


>At3g20080.1 68416.m02541 cytochrome P450 family protein similar to
           Cytochrome P450 93A1 (SP:Q42798)  {Glycine max};
           contains Pfam profile: PF00067 cytochrome P450
          Length = 523

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 300 LHPRSDIAARSDSVSCRSGGLYI 368
           LHP   + AR     CR GG Y+
Sbjct: 373 LHPPGPLFARFSQEGCRIGGFYV 395


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,979,727
Number of Sequences: 28952
Number of extensions: 108287
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)