Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C05
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   2.6  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   4.5  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    25   5.9  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   5.9  

>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 121 LKSSTLQVKNVNAILNNPLSKLSFEMRSFYRN 26
           L SS    KN NAIL++ L+K S +++    N
Sbjct: 736 LHSSLSDAKNTNAILSSELTKSSEDVKRLTAN 767


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -1

Query: 394  ETTQRALWSMKIPPLSTVRHYKIKTKLINH 305
            ETTQR   S K+P  S   H   K    NH
Sbjct: 919  ETTQRIRESAKVPRTSAGNHLSEKLNSDNH 948


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 142 LQSLNVSILTLTF*FKKNYIRELSDDQIKINIFNSKHYNIFTILKLNQSECYIS 303
           L  ++  + + TF +  +YI    DD  KI+I       ++ ++ L    CYIS
Sbjct: 242 LPKIHSKLESETFVWPSSYIDFFIDDTSKISIKWMSINQLYLLIYLISGFCYIS 295


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +1

Query: 130  CVYFLQSLNVSILTLTF*FKKNYIRELSDDQIKI----NIFNSKHYNIF 264
            CVY     ++S  +LTF F+K+Y   + D  +K+     +F+S  Y I+
Sbjct: 1129 CVY-----DISFGSLTFYFQKSYFNAIYDFLLKLKRFQELFSSIRYAIY 1172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,439,063
Number of Sequences: 5004
Number of extensions: 24879
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)