Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C05
         (406 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24731| Best HMM Match : DUF1534 (HMM E-Value=8.8)                   30   0.82 
SB_17282| Best HMM Match : LRR_1 (HMM E-Value=1.1e-07)                 27   7.7  

>SB_24731| Best HMM Match : DUF1534 (HMM E-Value=8.8)
          Length = 128

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +1

Query: 1   CCRNRHEASFYKRISFQRTACLVDCLELH*HFLLEVYYFLK*ICVYFLQSLNVSIL 168
           CC  R ++ FY R+  Q    L D       +    YYF   I ++FL+S  V IL
Sbjct: 21  CCDER-DSRFYYRLVLQTKRFLKDFSPFDSAYFRIKYYFQAAIFLHFLKSAKVQIL 75


>SB_17282| Best HMM Match : LRR_1 (HMM E-Value=1.1e-07)
          Length = 651

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +1

Query: 151 LNVSILTLTF*FK--KNYIRELSDDQIKINIFNSKHYNIFTILKLNQSECYISCDLLI 318
           LN ++  L F FK  K+Y+ + S+ + KI     ++ N+F++  +    C+I C  L+
Sbjct: 137 LNRTVEILGFSFKQVKDYVTKFSESRPKIWEHIQQNANLFSLCYI-PVNCFIICHCLL 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,195,022
Number of Sequences: 59808
Number of extensions: 159219
Number of successful extensions: 202
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)