Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C05
         (406 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022976-8|AAC69087.2|  366|Caenorhabditis elegans Serpentine re...    28   2.2  
AC087081-6|AAG37976.1|  301|Caenorhabditis elegans Hypothetical ...    26   9.0  

>AF022976-8|AAC69087.2|  366|Caenorhabditis elegans Serpentine
           receptor, class w protein107 protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 97  LLEVYYFLK*ICVYFLQSLNVSILTL 174
           L+  Y+ L  IC +FL SL + ILTL
Sbjct: 210 LIRTYFILDVICSHFLPSLALPILTL 235


>AC087081-6|AAG37976.1|  301|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.11 protein.
          Length = 301

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -1

Query: 220 DHPIIREYSFF*IKMSMSIY*HSMIAKN-KRKFILKSSTLQV--KNVNAILNNPLSKLSF 50
           +H +  E   F  K   +I   +++  N K K I + S L++   ++  +LNN LSK SF
Sbjct: 55  NHKVELELDKFQTKYYSAIDGSTVLNYNEKEKIIKRESCLKIVFNDLEILLNNSLSKFSF 114

Query: 49  EM 44
            +
Sbjct: 115 SV 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,000,358
Number of Sequences: 27780
Number of extensions: 138436
Number of successful extensions: 271
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)