Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C05
         (406 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g13290.2 68415.m01465 glycosyl transferase family 17 protein ...    27   6.3  
At2g13290.1 68415.m01464 glycosyl transferase family 17 protein ...    27   6.3  
At3g56690.1 68416.m06306 calmodulin-binding protein identical to...    26   8.3  

>At2g13290.2 68415.m01465 glycosyl transferase family 17 protein low
           similarity to beta-1,4-mannosyl-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
           from Mus musculus [SP|Q10470], Rattus norvegicus
           [SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
           profile PF04724 :Glycosyltransferase family 17
          Length = 361

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 382 RALWSMKIPPLSTVRHYKIKTKLINHTICSIH 287
           R LW    PP   + HY  +   + H +C +H
Sbjct: 42  RPLWDKPPPPFKRIPHYYAENVSMGH-LCELH 72


>At2g13290.1 68415.m01464 glycosyl transferase family 17 protein low
           similarity to beta-1,4-mannosyl-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
           from Mus musculus [SP|Q10470], Rattus norvegicus
           [SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
           profile PF04724 :Glycosyltransferase family 17
          Length = 361

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 382 RALWSMKIPPLSTVRHYKIKTKLINHTICSIH 287
           R LW    PP   + HY  +   + H +C +H
Sbjct: 42  RPLWDKPPPPFKRIPHYYAENVSMGH-LCELH 72


>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
           calmodulin-binding protein GI:6760428 from [Arabidopsis
           thaliana]
          Length = 1022

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 404 ADYGDDAESIVVHEDSTAF 348
           A+YGDD+ESI+  E    F
Sbjct: 120 AEYGDDSESIIADEPGNYF 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,143,520
Number of Sequences: 28952
Number of extensions: 113609
Number of successful extensions: 186
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)