Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C03
(402 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.36
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 28 0.62
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 27 1.1
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 26 1.9
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 3.3
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 4.4
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 25 5.8
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 5.8
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 24 7.7
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 24 7.7
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 24 7.7
>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 28.7 bits (61), Expect = 0.36
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = -1
Query: 237 GHPLPDIVRTRPPQFVFAR--ACCLYKDCALSPIRRIHLLGSRDIV*R 100
GHP P V T PP + C YK C R IH SR++ R
Sbjct: 231 GHPSPATVTTLPPFMSMSTIPIPCKYKPCLNPACRFIHPTKSRNMTWR 278
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 27.9 bits (59), Expect = 0.62
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 2 HEAIVKVSCDFNYKNEGFISCNRRYPGCLYACYRY 106
+E +V CD + + + CNR+YP C C +Y
Sbjct: 48 YETLVDTVCDVSSNSTFVVKCNRQYP-CT-RCLKY 80
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 27.1 bits (57), Expect = 1.1
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 189 IQTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAAS-EEREHAMKLIDYLLMRGELMSD 365
I +++A + + G + V+ + G LF+ S REH +KLI +L +
Sbjct: 287 IVNDLEACLDDIDKGLILNDHVLEKTGRTSLFYLPCSIYGREHEIKLIRKILRNSPRAIN 346
Query: 366 VSDLITVNTFEP 401
D + TF P
Sbjct: 347 HQDKKDLETFNP 358
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 26.2 bits (55), Expect = 1.9
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 192 QTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDYLLMRGELMSDV 368
+T DA + L +G H D NRP AKL + + + L DY+ E ++
Sbjct: 410 KTFYDAFSKNLKLGIH--EDAANRPALAKLLRYNSLNSPDDLISLEDYITKMPEHQKNI 466
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.4 bits (53), Expect = 3.3
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 147 VTMHNPCKDSMHAQIQTEVD-ASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMK 323
+T+ +P K+ ++T + AS+Q + ++ N P F DAASEE EH
Sbjct: 372 ITVTDPSKNLYERSVKTAAELASLQNVTETT--DNEIPNSPDF----LDAASEEDEHIPS 425
Query: 324 L 326
L
Sbjct: 426 L 426
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 4.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 83 CLYACYRYTMSREPSKCILRMGDNAQS 163
C Y C++ + +KCI + D+A S
Sbjct: 437 CHYTCHKKCYPKVVTKCISKSSDSASS 463
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 24.6 bits (51), Expect = 5.8
Identities = 12/41 (29%), Positives = 16/41 (39%)
Frame = -1
Query: 243 RNGHPLPDIVRTRPPQFVFARACCLYKDCALSPIRRIHLLG 121
R GH L DI R P ++ + C R+H G
Sbjct: 866 RRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQG 906
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 24.6 bits (51), Expect = 5.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 234 HPLPDIVRTRPPQFVFARACCLYKDCALSPI 142
HPL + R Q + C +Y C+++PI
Sbjct: 298 HPLQLRILIRGLQLLKVGGCLVYSTCSINPI 328
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 24.2 bits (50), Expect = 7.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 201 PQFVFARACCLYKD 160
P+FV+A ACC + D
Sbjct: 564 PRFVYAIACCAFGD 577
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 24.2 bits (50), Expect = 7.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 310 SLSSLAASKNSFANPGRLITSREKWAPIARYCTD 209
SLS+ + ++S A GR T K + RYC +
Sbjct: 1491 SLSTPLSQESSLARSGRKNTPSYKQKALRRYCME 1524
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 24.2 bits (50), Expect = 7.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 133 TFAGFT*HCIAIAGVETARVPTIARNKAFIFIIKITRYF 17
TF GF +C+ T+R+P I +A +K+ RY+
Sbjct: 361 TFDGFQDYCLMCGTDFTSRIPKIGPVRA----LKLIRYY 395
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,718,827
Number of Sequences: 5004
Number of extensions: 35321
Number of successful extensions: 109
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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