Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C03
         (402 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    57   5e-09
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    52   2e-07
04_01_0213 - 2692253-2694562                                           31   0.26 
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732...    29   1.0  
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916...    29   1.4  
03_05_0067 - 20460206-20460703,20461255-20461530                       29   1.8  
06_03_1183 + 28237467-28237612,28238035-28238089,28238216-282383...    28   2.4  
10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909...    28   3.2  
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589...    28   3.2  
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201...    27   4.2  
01_06_1539 + 38107108-38109649,38110563-38110915                       27   4.2  
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201...    27   5.6  
01_05_0554 + 23221374-23222017,23222158-23222296                       27   5.6  
01_01_0195 + 1697447-1697691,1698150-1698808,1699754-1701570,170...    27   5.6  
08_02_0191 + 14041201-14043894,14044354-14044632                       27   7.3  
07_01_0592 + 4409644-4410084                                           26   9.7  
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41...    26   9.7  

>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 57.2 bits (132), Expect = 5e-09
 Identities = 27/62 (43%), Positives = 40/62 (64%)
 Frame = +3

Query: 165 CKDSMHAQIQTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDYLLM 344
           C+ ++  QI  E +AS  Y ++ A+F RD +   GFAK F +++ EER+HA KL+ Y  M
Sbjct: 91  CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150

Query: 345 RG 350
           RG
Sbjct: 151 RG 152


>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 25/51 (49%), Positives = 34/51 (66%)
 Frame = +3

Query: 198 EVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDYLLMRG 350
           E +AS  Y ++ A+F RD +   GFAK F +++ EER+HA KLI Y  MRG
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRG 184


>04_01_0213 - 2692253-2694562
          Length = 769

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = -2

Query: 362 RHKLSPHEQVVDQLHRMLPLFASRVEEQLRESWTIDH---VTGEMGTHCQILYGRVHLSL 192
           R K+  +EQ++   H ML +      + +     +D    V  E     ++LY  V + L
Sbjct: 201 RRKMDNNEQILLAAHDMLHITKGAFIDNMAYEHDVDKQEIVRPETWNENEMLYDVVDMEL 260

Query: 191 YLRVHAVFTRIVHCHPFGGY 132
            L    ++T+    H +GGY
Sbjct: 261 SLMYDILYTKAAMVHTWGGY 280


>08_02_0749 - 20769224-20770535,20770649-20771510,20771622-20773263,
            20773357-20773701,20773858-20773952,20774218-20774344,
            20774430-20774435
          Length = 1462

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = -2

Query: 278  LRESWTIDHVTGEMGTHCQILYGRVHLSLYLRVHAVFTRIVHCHPFGGYICWVHVTLYSD 99
            L+ SW+   +    GT C    G   LS++LRV+   TR+   +P G  I     T+   
Sbjct: 880  LKCSWSTTCIDDGSGTMCAGSTGEKALSVHLRVNGE-TRMYEMNP-GHVIAGSSATVNQS 937

Query: 98   SRRRDSQGTD 69
             R  D  G D
Sbjct: 938  ERVNDGLGDD 947


>07_03_0603 -
           19890664-19890823,19891104-19891329,19891498-19891636,
           19891849-19891942,19892291-19892311,19892506-19892941,
           19893133-19893280,19893369-19893476,19893543-19893659,
           19893960-19894016,19894488-19894553,19895140-19895328,
           19895410-19895523,19895684-19895766,19895857-19896322,
           19896832-19897476
          Length = 1022

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 314 MLPLFASRVEEQLRESWTIDHVTGEMGTH 228
           M P  A+ + + LRE  ++D VT  MG+H
Sbjct: 169 MTPAMAASLRDSLREVCSLDDVTERMGSH 197


>03_05_0067 - 20460206-20460703,20461255-20461530
          Length = 257

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 330 DYLLMRGELMSDVSDLITVNTFE 398
           DY +  G+L SDV+DLI  +TF+
Sbjct: 159 DYTIFVGDLASDVTDLILQDTFK 181


>06_03_1183 +
           28237467-28237612,28238035-28238089,28238216-28238354,
           28238433-28238487,28238578-28238646,28239338-28239560,
           28239645-28239740,28240708-28240827,28240937-28241062,
           28241369-28241524,28242706-28242828,28242913-28242980,
           28243119-28243254,28243365-28243530,28243615-28243853
          Length = 638

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 168 KDSMHAQIQTEVDASVQYLAMGA-HFSRDVINRPGFAKLF 284
           ++ M A++Q  +     YL   A  FS +V+N+PGF  ++
Sbjct: 131 RNCMSARLQLTISKRSHYLVTFACWFSENVMNKPGFVDIY 170


>10_07_0061 +
           12489552-12489674,12490761-12490836,12490916-12490980,
           12491089-12491166,12492156-12492236,12492813-12492974,
           12493328-12493426,12493509-12494797,12495063-12495286,
           12495373-12495500,12495596-12495634,12495724-12497178
          Length = 1272

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = -2

Query: 395 EGVDG-DKIADVRHKLSPHEQVVDQLHRMLPLFASRVEEQLRESWTIDHVTGEMGTHCQI 219
           E +DG DK  D    ++P   V+DQ     P  + +   +  + W     +GE     + 
Sbjct: 451 EQMDGMDKSKDTLQAMAPENSVLDQQQPQAPHLSQQAGPRNMQQWQNPRFSGEKDLKKEE 510

Query: 218 LYGRVHLSLYLRVHAV 171
           +  R  ++   RV +V
Sbjct: 511 MLQRRKIAATSRVSSV 526


>03_02_0143 -
           5888005-5888088,5888818-5888949,5889485-5889634,
           5890540-5890710,5890840-5891007,5891139-5891234,
           5891777-5891839,5891949-5892114,5892207-5892274,
           5892646-5892789,5893111-5893176,5893329-5893520,
           5894567-5894657,5895241-5895329,5895521-5895583,
           5895698-5895823,5895902-5895991,5896059-5896181,
           5896503-5896619,5896704-5896904,5897643-5897723,
           5897897-5897977,5898083-5898184,5898264-5898488,
           5898571-5898726,5898798-5899010,5899306-5899455,
           5900082-5900204,5900299-5900364,5900555-5900620,
           5900686-5900817,5900891-5900965,5901355-5901438,
           5901516-5901668,5901741-5901806,5902044-5902205,
           5902272-5902388,5902495-5902566,5902702-5902761,
           5902869-5902985,5904131-5904430,5904518-5904622,
           5905710-5905775,5905853-5906297,5906399-5906567,
           5906684-5906736,5906819-5906925
          Length = 1981

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = -3

Query: 379 IRSLTSDISSPLMSK*S-ISFIACSLSS-LAASKNSFANPGRLITSREKWAPIARYCTDA 206
           +++L ++++S    + S ++ +   L+  +  +KN       ++T+ EKW  I R  +D 
Sbjct: 497 MKALAAEVTSTFSRRLSPLNLVVRELTGDMQLTKNEIEETQMIVTTPEKWDVITRKSSDM 556

Query: 205 STSVCI 188
           S S+ +
Sbjct: 557 SLSMLV 562


>07_03_1503 +
           27017933-27018063,27019668-27019727,27019996-27020101,
           27020254-27020325,27021008-27021061,27021707-27021856,
           27022206-27022547,27022651-27024684,27024706-27024947,
           27025658-27026235,27026329-27028183,27028533-27028851,
           27028980-27029417
          Length = 2126

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 195 FVFARACCLYKDCALSPIRRIHLLGSRDI 109
           F+   A C Y+DC  S +R +   G RD+
Sbjct: 514 FLCEWATCDYRDCRTSLLRNVKFTGRRDL 542


>01_06_1539 + 38107108-38109649,38110563-38110915
          Length = 964

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 6   RQSSKYLVILIIKMKALFLAIVGTLAVSTPAIA-IQCHV-NPANVSSEWVTMHNPCK 170
           +Q   YL  +++ +K     I  +L + T A+  I+ H+ +P N    W   H+PC+
Sbjct: 4   QQLQIYLCFILLSLK---FGISASLPLETDALLDIKSHLEDPQNYLGNWDESHSPCQ 57


>01_07_0254 +
           42318181-42319471,42319581-42319792,42319909-42320132,
           42320232-42321009
          Length = 834

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/64 (21%), Positives = 29/64 (45%)
 Frame = -2

Query: 338 QVVDQLHRMLPLFASRVEEQLRESWTIDHVTGEMGTHCQILYGRVHLSLYLRVHAVFTRI 159
           + +DQ  +++  +    E++ R+    DH + +     ++L   + LS  L + AV    
Sbjct: 702 KTIDQFSKLVHEYKKTQEKEHRQKRKADHASRDYNKRRKVLQRELGLSTSLDMVAVMENT 761

Query: 158 VHCH 147
            H H
Sbjct: 762 HHSH 765


>01_05_0554 + 23221374-23222017,23222158-23222296
          Length = 260

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 400 GSKV-LTVIRSLTSDISSPLMSK*SISFIACSLSSLAASKNSFANP 266
           G +V L ++ SLT D S+PL S+  +      ++    SKNSF  P
Sbjct: 69  GDRVGLGLVDSLTDDSSTPLGSRKVLLGSEMRITDNVTSKNSFTAP 114


>01_01_0195 +
           1697447-1697691,1698150-1698808,1699754-1701570,
           1701700-1701771
          Length = 930

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 166 VKTACTRKYKLRWTRPYNIWQWVPISPVT 252
           ++   T   K RW  PYN+ Q  P  PVT
Sbjct: 89  IRVQITDADKPRWEVPYNLLQREPAPPVT 117


>08_02_0191 + 14041201-14043894,14044354-14044632
          Length = 990

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
 Frame = -3

Query: 265  GRLITSREKWAPIARYCTDASTSVCICACMLS--LQGLCIVTHSEDTFAG 122
            GRL    EKWA  + +   AS   C   C  +      C   HS  TF G
Sbjct: 875  GRLHGLLEKWAWPSSHTEGASNQECTTGCSQARGASTACWPAHSAATFGG 924


>07_01_0592 + 4409644-4410084
          Length = 146

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 299 RREGACDEADRL-LAHEGRAYV*RQRSYHRQHLRT 400
           RR G   EA R   A +GR +V RQR  H   L T
Sbjct: 65  RRSGTLREATRREAAEDGREHVVRQRRRHIHRLST 99


>02_01_0055 +
           410661-411380,411481-413733,414486-414875,414983-418153
          Length = 2177

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 12  SSKYLVILIIKMKALFLAIVGTLAVSTPAIAI 107
           ++KY ++ +  MKAL   +VG L+    A  I
Sbjct: 569 NTKYKIVYVAPMKALVAEVVGNLSARLSAYGI 600


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,520,058
Number of Sequences: 37544
Number of extensions: 249585
Number of successful extensions: 664
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)