Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C03
(402 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ... 58 3e-09
At3g11050.1 68416.m01333 ferritin, putative similar to ferritin ... 52 1e-07
At3g56090.1 68416.m06234 ferritin, putative similar to ferritin ... 52 2e-07
At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin... 48 3e-06
At3g61010.1 68416.m06826 glycosyl hydrolase family protein 85 hy... 41 4e-04
At5g51970.2 68418.m06450 sorbitol dehydrogenase, putative / L-id... 29 1.2
At5g51970.1 68418.m06449 sorbitol dehydrogenase, putative / L-id... 29 1.2
At5g36870.1 68418.m04417 glycosyl transferase family 48 protein ... 29 1.2
At3g30640.1 68416.m03878 Ulp1 protease family protein contains P... 29 1.2
At1g71490.1 68414.m08263 pentatricopeptide (PPR) repeat-containi... 28 2.7
At3g02960.1 68416.m00291 copper-binding protein-related low simi... 27 4.7
At1g55350.4 68414.m06326 calpain-type cysteine protease family i... 27 4.7
At1g55350.3 68414.m06325 calpain-type cysteine protease family i... 27 4.7
At1g55350.2 68414.m06324 calpain-type cysteine protease family i... 27 4.7
At1g55350.1 68414.m06323 calpain-type cysteine protease family i... 27 4.7
At5g59750.1 68418.m07489 riboflavin biosynthesis protein, putati... 27 6.2
At5g26010.1 68418.m03095 protein phosphatase 2C, putative / PP2C... 27 6.2
At3g27500.1 68416.m03438 DC1 domain-containing protein contains ... 27 6.2
At1g53430.1 68414.m06056 leucine-rich repeat family protein / pr... 26 8.2
>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
subunit cowpea2 precursor [Vigna unguiculata]
GI:2970654; contains Pfam profile PF00210: Ferritin-like
domain
Length = 259
Score = 57.6 bits (133), Expect = 3e-09
Identities = 31/78 (39%), Positives = 47/78 (60%)
Frame = +3
Query: 165 CKDSMHAQIQTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDYLLM 344
C+ +++ QI E + S Y AM A+F RD I G AK F +++ EEREHA KL++Y
Sbjct: 97 CEAAINEQINVEYNVSYVYHAMYAYFDRDNIALKGLAKFFKESSLEEREHAEKLMEYQNK 156
Query: 345 RGELMSDVSDLITVNTFE 398
RG + S ++ ++ FE
Sbjct: 157 RGGRVKLQSIVMPLSEFE 174
>At3g11050.1 68416.m01333 ferritin, putative similar to ferritin
subunit cowpea2 precursor GI:2970654 (Vigna
unguiculata); contains Pfam profile PF00210:
Ferritin-like domain
Length = 253
Score = 52.0 bits (119), Expect = 1e-07
Identities = 28/77 (36%), Positives = 44/77 (57%)
Frame = +3
Query: 168 KDSMHAQIQTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDYLLMR 347
+ +++ QI E + S Y A+ A+F RD + GFAK F D++ EER HA ++Y R
Sbjct: 90 ESAINDQINVEYNVSYVYHALYAYFDRDNVGLKGFAKFFNDSSLEERGHAEMFMEYQNKR 149
Query: 348 GELMSDVSDLITVNTFE 398
G + S L+ V+ F+
Sbjct: 150 GGRVKLQSILMPVSEFD 166
>At3g56090.1 68416.m06234 ferritin, putative similar to ferritin
subunit cowpea2 precursor [Vigna unguiculata]
GI:2970654; contains Pfam profile PF00210: Ferritin-like
domain
Length = 259
Score = 51.6 bits (118), Expect = 2e-07
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +3
Query: 153 MHNP-CKDSMHAQIQTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLI 329
+++P C+ +++ QI E + S Y A+ A+F RD + G AK F +++ EEREHA L+
Sbjct: 90 LYSPECEAAVNEQINVEYNVSYVYHALYAYFDRDNVALKGLAKFFKESSVEEREHAELLM 149
Query: 330 DYLLMRG 350
+Y RG
Sbjct: 150 EYQNKRG 156
>At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin
[Arabidopsis thaliana] GI:1246401, GI:8163920
Length = 255
Score = 47.6 bits (108), Expect = 3e-06
Identities = 23/58 (39%), Positives = 34/58 (58%)
Frame = +3
Query: 177 MHAQIQTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDYLLMRG 350
++ QI E + S Y +M A+F RD + G AK F +++ EER HA K ++Y RG
Sbjct: 98 INEQINVEYNVSYVYHSMYAYFDRDNVAMKGLAKFFKESSEEERGHAEKFMEYQNQRG 155
>At3g61010.1 68416.m06826 glycosyl hydrolase family protein 85
hypothetical protein F9F8.14 - Arabidopsis thaliana,
EMBL:AC009991
Length = 355
Score = 40.7 bits (91), Expect = 4e-04
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +3
Query: 189 IQTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDY 335
I E + S Y A+ A+ RD + GF K F D++ EER +A K ++Y
Sbjct: 297 IDVEYNVSYVYHALDAYIERDNVGLKGFTKFFNDSSLEERGYAEKFMEY 345
>At5g51970.2 68418.m06450 sorbitol dehydrogenase, putative /
L-iditol 2-dehydrogenase, putative similar to
NAD-dependent sorbitol dehydrogenase from Malus x
domestica [gi:4519539]
Length = 364
Score = 29.1 bits (62), Expect = 1.2
Identities = 20/55 (36%), Positives = 23/55 (41%)
Frame = +3
Query: 72 GTLAVSTPAIAIQCHVNPANVSSEWVTMHNPCKDSMHAQIQTEVDASVQYLAMGA 236
G+LA A C P NVS E M P +HA + EV L MGA
Sbjct: 136 GSLANQVVHPADLCFKLPENVSLEEGAMCEPLSVGVHACRRAEVGPETNVLVMGA 190
>At5g51970.1 68418.m06449 sorbitol dehydrogenase, putative /
L-iditol 2-dehydrogenase, putative similar to
NAD-dependent sorbitol dehydrogenase from Malus x
domestica [gi:4519539]
Length = 364
Score = 29.1 bits (62), Expect = 1.2
Identities = 20/55 (36%), Positives = 23/55 (41%)
Frame = +3
Query: 72 GTLAVSTPAIAIQCHVNPANVSSEWVTMHNPCKDSMHAQIQTEVDASVQYLAMGA 236
G+LA A C P NVS E M P +HA + EV L MGA
Sbjct: 136 GSLANQVVHPADLCFKLPENVSLEEGAMCEPLSVGVHACRRAEVGPETNVLVMGA 190
>At5g36870.1 68418.m04417 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1862
Score = 29.1 bits (62), Expect = 1.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -2
Query: 260 IDHVTGEMGTHCQILYGRVHLSLYLRVHAVFTRIVHC 150
+D+ +GT Q+L+ + +SL+L A+F ++ C
Sbjct: 1720 LDYARRRLGTEFQLLFRIIKVSLFLAFMAIFITLMTC 1756
>At3g30640.1 68416.m03878 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 661
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 395 EGVDGDKIADVRHKLSPHEQVVDQLHRMLPLFASRVEEQLR 273
E DG+++AD L +Q+V + +R+LP EE +R
Sbjct: 385 EKADGERVADDDSILDVTDQIVSEYNRLLPESDEDEEETMR 425
>At1g71490.1 68414.m08263 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 681
Score = 27.9 bits (59), Expect = 2.7
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 27 VILIIKMKALFLAIVGTLAVSTPAIAIQCHVNPA-NVSSEWVTMHNPCKDSMHAQI 191
V +II +KA L L +AI + NV + +TM++ CKD HA I
Sbjct: 281 VAMIIGLKACSLIGAIRLGKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHALI 336
>At3g02960.1 68416.m00291 copper-binding protein-related low
similarity to copper homeostasis factor gi:3168840 from
Arabidopsis thaliana; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 246
Score = 27.1 bits (57), Expect = 4.7
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = -2
Query: 386 DGDKIADVRHKLSPHEQVVDQLHRMLPLFASRVEEQLRESWTIDHVTGEMGTHCQILYGR 207
+GD D K + +++V +++ AS+V LR ++H+ E+G + ++ G+
Sbjct: 21 NGDSSVDKSDKKNQCKEIVLKVYMHCEGCASQVSHCLRGYDGVEHIKTEIGDNKVVVSGK 80
Query: 206 VH--LSLYLRVHAVFTR 162
L + RV F+R
Sbjct: 81 FDDPLKILRRVQKKFSR 97
>At1g55350.4 68414.m06326 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 27.1 bits (57), Expect = 4.7
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -3
Query: 238 WAPIARYCTDASTS-VCICACMLSLQGLCIVTHSEDTFAG 122
WA Y T TS VC A +L L + H + FAG
Sbjct: 960 WASNNFYLTRKQTSFVCFLALLLGLAAFLLGWHQDKAFAG 999
>At1g55350.3 68414.m06325 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 27.1 bits (57), Expect = 4.7
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -3
Query: 238 WAPIARYCTDASTS-VCICACMLSLQGLCIVTHSEDTFAG 122
WA Y T TS VC A +L L + H + FAG
Sbjct: 960 WASNNFYLTRKQTSFVCFLALLLGLAAFLLGWHQDKAFAG 999
>At1g55350.2 68414.m06324 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 27.1 bits (57), Expect = 4.7
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -3
Query: 238 WAPIARYCTDASTS-VCICACMLSLQGLCIVTHSEDTFAG 122
WA Y T TS VC A +L L + H + FAG
Sbjct: 960 WASNNFYLTRKQTSFVCFLALLLGLAAFLLGWHQDKAFAG 999
>At1g55350.1 68414.m06323 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 27.1 bits (57), Expect = 4.7
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -3
Query: 238 WAPIARYCTDASTS-VCICACMLSLQGLCIVTHSEDTFAG 122
WA Y T TS VC A +L L + H + FAG
Sbjct: 960 WASNNFYLTRKQTSFVCFLALLLGLAAFLLGWHQDKAFAG 999
>At5g59750.1 68418.m07489 riboflavin biosynthesis protein, putative
similar to SP|P50855 Riboflavin biosynthesis protein
ribA [Includes: GTP cyclohydrolase II (EC 3.5.4.25);
3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP
synthase)] {Actinobacillus pleuropneumoniae}; contains
Pfam profiles PF00925: GTP cyclohydrolase II, PF00926:
3,4-dihydroxy-2-butanone 4-phosphate synthase
Length = 509
Score = 26.6 bits (56), Expect = 6.2
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -3
Query: 310 SLSSLAASKNSFANPGRLITSREKWAPIARYC--TDASTSVCICACMLSLQGLCIVTHSE 137
+LSSL A + F PG + + + + R T+AS + I A + L L + E
Sbjct: 210 ALSSLDAKPDDFRRPGHVFPLKYRDGGVLRRAGHTEASVDLMILAGLRPLSVLSAILDQE 269
Query: 136 D 134
D
Sbjct: 270 D 270
>At5g26010.1 68418.m03095 protein phosphatase 2C, putative / PP2C,
putative protein phosphatase-2C, Mesembryanthemum
crystallinum, AF075579
Length = 337
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 249 HGRNGHPLPDIVRTRPPQFVFA 184
HG+NGH + +VR R P + A
Sbjct: 80 HGKNGHMVSKMVRNRLPSVLLA 101
>At3g27500.1 68416.m03438 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 609
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 62 CNRRYPGCLYACYRYTMSREPSKCILRMGDNAQ 160
CN Y G Y CYR + R KC++ + + Q
Sbjct: 144 CNENYEGQGYLCYRCGL-RIHEKCVVELQEITQ 175
>At1g53430.1 68414.m06056 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1030
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = -3
Query: 286 KNSFANPGRLITSREKWAPIARYCTDASTSVCICACMLSLQGLCIVTH 143
+N N R S + W + +++ TS C C + +C VT+
Sbjct: 47 QNQTVNIERTSCSDQNWNFVVESASNSPTSNITCDCTFNASSVCRVTN 94
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,072,732
Number of Sequences: 28952
Number of extensions: 191527
Number of successful extensions: 526
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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