Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C02
(419 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 120 7e-29
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 50 1e-07
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 44 7e-06
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 43 2e-05
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 43 2e-05
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 38 6e-04
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 29 0.22
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy... 29 0.29
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 3.6
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 25 4.8
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 4.8
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 24 8.4
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 120 bits (290), Expect = 7e-29
Identities = 60/139 (43%), Positives = 90/139 (64%), Gaps = 1/139 (0%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
P AKL+V A+Q Q++E+GD NFV+V +T EIA GYE AL +
Sbjct: 80 PAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTM 139
Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGNEDFIAELVAKACVGILP-EKTTFNV 358
E+L + +++ V+ +E+ KAIR I SKQYGNEDF+++LVAKA + +LP + + FNV
Sbjct: 140 EVLEEICADKIETVESEKELIKAIRTCISSKQYGNEDFLSDLVAKAILTVLPKDPSKFNV 199
Query: 359 DNVRICQILGAGLLQSEVL 415
DN+R+ +I+G+ L S+V+
Sbjct: 200 DNIRVVKIMGSSLYNSQVV 218
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 50.4 bits (115), Expect = 1e-07
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 2/132 (1%)
Frame = +2
Query: 8 AKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCLEL 187
AK++V S++QD EVGDGT V V + I DGY A ++
Sbjct: 77 AKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDA 136
Query: 188 LPGLVCSEVKD-VKDIQEVTKAIRPAIMSKQYG-NEDFIAELVAKACVGILPEKTTFNVD 361
L D K ++ R + SK N++ A+L A +L K + N+D
Sbjct: 137 LRASSIDNSSDPAKFRSDLENIARTTLSSKILSQNKNHFAQLAVDA---VLRLKGSTNLD 193
Query: 362 NVRICQILGAGL 397
N++I +ILG L
Sbjct: 194 NIQIIKILGGKL 205
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 44.4 bits (100), Expect = 7e-06
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
P K++V +Q QD EVGDGT V++ + + I GY A+ + +
Sbjct: 75 PAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAV 134
Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGNE-DFIAELVAKACVGI 331
+ + ++ V D + + + ++ SK GN+ DF + + A + +
Sbjct: 135 KFMTDVLSCSV-DSLGKESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSV 184
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 43.2 bits (97), Expect = 2e-05
Identities = 28/85 (32%), Positives = 39/85 (45%)
Frame = +2
Query: 8 AKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCLEL 187
AKL+V S+ QD E+GDGT V+V + IADGYE+A ++
Sbjct: 90 AKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKH 149
Query: 188 LPGLVCSEVKDVKDIQEVTKAIRPA 262
L + S+V D + T R A
Sbjct: 150 LDAI--SDVVDFSP-ENTTNLFRSA 171
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 42.7 bits (96), Expect = 2e-05
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYER----AL 169
P AK +V ++ QD+EVGDGT V+V V++ I GY + A+
Sbjct: 78 PAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAV 137
Query: 170 DKCLELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQY-GNEDFIAELVAKACVGILPEKT 346
+K E+ L S+ ++D+ +TK A+ SK N F ++V A + + E
Sbjct: 138 NKIKEIAIHLDLSDEGKLRDL--LTKCASTAMNSKLIRSNSTFFTKMVVDAVLTLDQEDL 195
Query: 347 TFNVDNVR 370
N+ ++
Sbjct: 196 NENMIGIK 203
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 37.9 bits (84), Expect = 6e-04
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
P AK M+ ++ QD EVGDGT VI+ + + +++AL+ L
Sbjct: 73 PAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDAL 132
Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGN-EDFIAELVAKA 319
++ + +V D E+ + IR I +K D + L +A
Sbjct: 133 SIIDEITLP--VNVDDNAEMFRLIRTCIGTKLVARWSDLMCHLALRA 177
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 29.5 bits (63), Expect = 0.22
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = -2
Query: 382 DLTYSDIIYIESSFLRQDTDTCLCYKFSNKIFISVLFRHYSWPNSFSDFLNVLDIFNFRT 203
D+T + + SS++ D D L YK K+F S + D+ N + F R
Sbjct: 691 DVTAEEGSELPSSYVCVDLDDTLVYKTRTKVFTSNPIYNAGSEKFVKDWRNAMLCFTVRD 750
Query: 202 YKSRK 188
+K R+
Sbjct: 751 FKLRE 755
>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 29.1 bits (62), Expect = 0.29
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +2
Query: 197 LVCSEVKDVKDIQEVTKAIRPAIMSKQYGNEDFIAELVAKACVGILPEKTTFNVDNVRIC 376
L C + D K Q+V + +R I++ + + IAE + C+ E T DN+ +C
Sbjct: 227 LACDGIWDCKTSQQVIEFVRRGIVAGT--SLEKIAENLMDNCIASDTETTGLGCDNMTVC 284
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.4 bits (53), Expect = 3.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 322 TCLCYKFSNKIFISVLFRHYSWPNSFS 242
T C+ ++ IF++ LF HY + S +
Sbjct: 1167 TFCCWYYAGIIFLNTLFHHYEYVMSIA 1193
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 25.0 bits (52), Expect = 4.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 131 TTSEIADGYERALDKCLELLPGLVCSEVKDVK 226
T SEI +GYE+ L L+L EV ++K
Sbjct: 26 TRSEIVEGYEKCLKLVLQLRIFSSNEEVDEIK 57
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.0 bits (52), Expect = 4.8
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = -2
Query: 412 NFRLQEPCTKDLTYSDII------YIESSFLRQDTDTCLCYKFSNKIFISVLFR 269
+F+ E T+D T SDI + +S FL +++ + Y F + VLFR
Sbjct: 804 SFQTDETQTEDETMSDIHPDDVENHSKSKFLGEESKNIIGYNFFGNATMYVLFR 857
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 24.2 bits (50), Expect = 8.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 250 SFSDFLNVLDIFNFRTYKSRK*F*TLIKRSLISISNFTCSDS 125
+F D + N R YK RK F + I++S I + SDS
Sbjct: 189 NFKDDYEKIKEENKRLYKERKSFLSKIEKSACEIHDLKESDS 230
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,444,082
Number of Sequences: 5004
Number of extensions: 24374
Number of successful extensions: 88
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -