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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C02
         (419 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806...   104   3e-23
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995...    44   7e-05
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516...    44   7e-05
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880...    44   7e-05
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832...    44   7e-05
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118...    42   2e-04
10_08_0620 - 19321612-19323237                                         37   0.008
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949     36   0.010
04_04_0729 + 27612106-27612195,27612284-27612370,27612469-276125...    35   0.031
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648...    34   0.040
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351...    28   2.7  
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912...    28   3.5  
04_04_0200 - 23529497-23531938,23532586-23533720,23534272-235344...    27   4.6  
07_03_0297 - 16383159-16383626                                         27   8.1  
04_04_0929 - 29474540-29475247,29475485-29475850,29476032-294760...    27   8.1  

>03_06_0362 +
           33379489-33379624,33380161-33380423,33380524-33380670,
           33380753-33380914,33381681-33381758,33382329-33382462,
           33382702-33382774,33382852-33382929,33383002-33383124,
           33383223-33383317,33383723-33383932,33384115-33384172,
           33384268-33384333
          Length = 540

 Score =  104 bits (250), Expect = 3e-23
 Identities = 57/141 (40%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
 Frame = +2

Query: 2   PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
           P AK++VLA + Q  E+GDG N  I                 +  SEI  GY +A++K +
Sbjct: 76  PAAKILVLAGRAQQEEIGDGANLTISFAGELLEKAEELIRMGLHPSEIIIGYTKAINKTV 135

Query: 182 ELLPGLV--CSEVKDVKDIQEVTKAIRPAIMSKQYGNEDFIAELVAKACVGILPEK-TTF 352
           E+L  LV   SE  DV++ +EV   +R A+ SKQ+G ED +  LVA AC+ + P+    F
Sbjct: 136 EILEDLVEKGSENMDVRNKEEVVLLMRSAVASKQFGQEDILCPLVADACMQVCPKNPANF 195

Query: 353 NVDNVRICQILGAGLLQSEVL 415
           NVDNVR+ ++LG GL  S V+
Sbjct: 196 NVDNVRVAKLLGGGLHNSSVV 216


>06_03_1193 -
           28298656-28298754,28299303-28299377,28299456-28299544,
           28299679-28299760,28300385-28300474,28300557-28300655,
           28300733-28300852,28300968-28301084,28301174-28301309,
           28301415-28301584,28301744-28301947,28302032-28302157,
           28302841-28303101,28303215-28303229
          Length = 560

 Score = 43.6 bits (98), Expect = 7e-05
 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
 Frame = +2

Query: 2   PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
           P AK++V  ++ QDSEVGDGT  V++                V    +   Y  A    +
Sbjct: 77  PAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPYIEDGVHPHSLIRSYRTAGHLAI 136

Query: 182 ELLPGLVCS-EVKDVKDIQE-VTKAIRPAIMSKQYGNE-DFIAELVAKACVGI 331
           E +  L  S E K +++ +E + K     + SK  G E +F A +V  A + I
Sbjct: 137 EKVKDLATSIEGKSLEEKKELLAKCAATTLSSKLIGGEKEFFASMVVDAVLAI 189


>06_03_0477 -
           21250811-21250981,21251261-21251374,21251447-21251613,
           21252051-21252153,21252315-21252367,21252438-21252570,
           21252835-21253183,21253685-21254003,21254519-21254717
          Length = 535

 Score = 43.6 bits (98), Expect = 7e-05
 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 2/138 (1%)
 Frame = +2

Query: 8   AKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCLEL 187
           AKLMV  S  QD E+GDGT  V+V                +    IA+GYE A     + 
Sbjct: 84  AKLMVELSCSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYELASRIAFDH 143

Query: 188 LPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGN-EDFIAELVAKACVGILP-EKTTFNVD 361
           L  +         +I+ + +     + SK     +  +AE+  KA + +   E+   N+D
Sbjct: 144 LEHISHKFEFSATNIEPLVQTCMTTLSSKIVNRCKRTLAEIAVKAVLAVADLERKDVNLD 203

Query: 362 NVRICQILGAGLLQSEVL 415
            +++   +G  L  +E++
Sbjct: 204 LIKVEGKVGGKLEDTELV 221


>03_05_0339 +
           23287620-23287676,23287784-23287849,23287937-23288048,
           23288240-23288368,23288795-23288866,23289245-23289360,
           23289494-23289570,23289788-23290273,23290373-23290688,
           23290769-23290915
          Length = 525

 Score = 43.6 bits (98), Expect = 7e-05
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
 Frame = +2

Query: 2   PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
           P AK++V  S++QD EVGDGT  V+V                +    I  GY  A++   
Sbjct: 72  PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVNMKIHPMTIIAGYRMAVECAR 131

Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGNED--FIAELVAKACVGILPEKTTFN 355
             L        +++   +     I    +S +  ++D  + AEL   A   +L  K + N
Sbjct: 132 NALLERTMDNKENIDKFRSDLMNIAMTTLSSKILSQDKEYFAELAVDA---VLRLKGSTN 188

Query: 356 VDNVRICQILGAGLLQS 406
           ++ ++I +I G  L  S
Sbjct: 189 LEAIQILKIPGGSLKDS 205


>02_02_0253 -
           8325437-8325628,8325705-8325779,8325933-8326037,
           8326249-8326374,8326451-8326835,8326931-8327208,
           8327294-8327367,8327476-8327547,8327637-8327705,
           8340132-8340201,8340806-8340873,8341571-8341643,
           8341807-8341868,8342168-8342198
          Length = 559

 Score = 43.6 bits (98), Expect = 7e-05
 Identities = 34/107 (31%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
 Frame = +2

Query: 2   PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
           P AK M+  S+ QD EVGDGT  VIV                   + I   Y +ALD  L
Sbjct: 75  PAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAQAFIDKNYHPTVICRAYTKALDDAL 134

Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGN-EDFIAELVAKA 319
            +L  +      DV D   +   ++ +I +K  G   D IA+L   A
Sbjct: 135 SVLDKIAIP--VDVDDRVAMLGLVKSSIGTKFTGQFGDLIADLAIDA 179


>06_03_0353 +
           19810945-19810975,19811308-19811369,19811741-19811813,
           19813292-19813359,19813496-19813565,19813908-19813976,
           19814065-19814136,19814247-19814320,19814420-19814697,
           19814804-19815188,19815268-19815393,19815583-19815687,
           19815986-19815994,19817040-19817114,19817202-19817390
          Length = 561

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
 Frame = +2

Query: 2   PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
           P AK M+  S+ QD EVGDGT  VIV                   + I   Y +AL+  L
Sbjct: 75  PAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFIDKHYHPTVICRAYTKALEDAL 134

Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGN-EDFIAELVAKA 319
            +L  +      DV D   +   ++ +I +K  G   D IA+L   A
Sbjct: 135 AVLDKIAMH--VDVNDRAAMLGLVKSSIGTKFTGQFGDLIADLAIDA 179


>10_08_0620 - 19321612-19323237
          Length = 541

 Score = 36.7 bits (81), Expect = 0.008
 Identities = 28/141 (19%), Positives = 59/141 (41%), Gaps = 3/141 (2%)
 Frame = +2

Query: 2   PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
           P A+++   S+ QD+  GDGT  V+V                   +  AD       + +
Sbjct: 84  PAARMLADLSRSQDAAAGDGTTTVVVLAGSLLRRAQSLLSAGAHPTAAADALHLLAARAV 143

Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGN-EDFIAELVAKACVGILPEKTTFNV 358
           E+L G+      ++ D   + K+   A+ SK        ++ L   A + ++     + +
Sbjct: 144 EVLHGMAIP--VELSDRDALVKSASTALNSKVVSQYSTLLSPLAVDAALAVVDPAHPYLL 201

Query: 359 D--NVRICQILGAGLLQSEVL 415
           D  ++R+ + LG  +  +E++
Sbjct: 202 DLRDIRVVKKLGCTVDDTELI 222


>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
          Length = 550

 Score = 36.3 bits (80), Expect = 0.010
 Identities = 27/141 (19%), Positives = 58/141 (41%), Gaps = 3/141 (2%)
 Frame = +2

Query: 2   PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
           P A+++   S+ QD+  GDGT  V+V                   +  AD   R   + +
Sbjct: 80  PAARMLAELSRSQDAAAGDGTTTVVVLAGSLLRRAQSLLSAGAHPTAAADALHRLATRAV 139

Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGN-EDFIAELVAKACVGIL--PEKTTF 352
           E+L  +      ++ D   + K+   A+ SK        ++ L   A + ++        
Sbjct: 140 EVLHAMAIP--IELSDRDSLVKSASTALNSKVVSQYSSLLSPLAVDAALSVVDPAHPDLL 197

Query: 353 NVDNVRICQILGAGLLQSEVL 415
           ++ ++R+ + LG  +  +E++
Sbjct: 198 DLRDIRVVKKLGGTVDDTELI 218


>04_04_0729 +
           27612106-27612195,27612284-27612370,27612469-27612528,
           27612554-27612688,27612769-27612864,27613149-27613214,
           27613647-27613864,27614093-27614189,27614605-27614691,
           27614892-27615026,27615121-27615225,27615717-27615845,
           27615925-27616028,27616598-27616688,27616774-27616857
          Length = 527

 Score = 34.7 bits (76), Expect = 0.031
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 2   PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGY 157
           P AK++V  +++QD EVGDGT  V++                +  + I  GY
Sbjct: 27  PAAKVLVELAELQDREVGDGTTSVVIIAAELLKRGNDLVRNKIHPTSIISGY 78


>05_07_0067 +
           27463703-27463705,27464309-27464365,27464779-27464844,
           27464985-27465096,27465281-27465409,27466076-27466191,
           27466364-27466440,27466678-27467163,27467255-27467570,
           27467618-27467797
          Length = 513

 Score = 34.3 bits (75), Expect = 0.040
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +2

Query: 2   PRAKLMVLASQMQDSEVGDGTNFVIV 79
           P AK++V  S++QD EVGDGT  V+V
Sbjct: 73  PAAKVLVDISKVQDDEVGDGTTSVVV 98


>12_01_0445 -
           3513733-3513819,3514392-3514613,3514730-3514999,
           3515033-3517110,3517649-3517976,3519136-3519255,
           3519299-3519352,3520115-3520154,3520344-3520411
          Length = 1088

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/70 (22%), Positives = 37/70 (52%)
 Frame = +2

Query: 161 RALDKCLELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGNEDFIAELVAKACVGILPE 340
           R++    E +   +CS   +V  ++++ KA+   +  ++  +ED  A+L AK     +  
Sbjct: 763 RSVQTVKESMEAQLCSSNTEVLKLRDIVKALENEVEKEKALHEDLSAQLEAK-----IEA 817

Query: 341 KTTFNVDNVR 370
           + TF+V+ ++
Sbjct: 818 ERTFSVEAIK 827


>12_02_0648 +
           21490202-21490296,21490547-21490634,21491216-21491260,
           21491355-21491387,21491480-21491557,21491647-21491690,
           21491765-21491805,21492102-21492184,21492261-21492352,
           21492468-21492537,21492838-21492876,21493670-21493687,
           21494586-21494713,21495235-21495358,21495585-21495716,
           21496092-21496223,21496582-21496665
          Length = 441

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 283 K*RFYC*TCSKGMCRYLA*ENYFQCR*C 366
           K +F+C  C  G+CR    ENYF C  C
Sbjct: 116 KGQFHCYDC--GICRVGGKENYFHCAKC 141


>04_04_0200 -
           23529497-23531938,23532586-23533720,23534272-23534463,
           23535527-23535570
          Length = 1270

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 135 VVTPNWSSSSADSNRAPERTMTKLV 61
           V  P+W S + DS+R P     KLV
Sbjct: 225 VAVPSWRSKNLDSSREPSEKKCKLV 249


>07_03_0297 - 16383159-16383626
          Length = 155

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 152 GYERALDKCLELLPGLVCSEVKDVKDIQEVTKAIR 256
           GY  AL  CL+   G +   + +VK  +E  +AIR
Sbjct: 21  GYANALSLCLQRKDGGILEAMLEVKSTKEKFQAIR 55


>04_04_0929 -
           29474540-29475247,29475485-29475850,29476032-29476093,
           29476191-29476302,29476401-29476529,29476724-29476738
          Length = 463

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 141 SLVVTPNWSSSSADSNRAPERTMTKLVPSPTSESCI 34
           S+  T   +S + +S R   R   ++VPSP S  C+
Sbjct: 386 SVPETATHNSETTESYRNGNRNEDEMVPSPDSRKCV 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,911,210
Number of Sequences: 37544
Number of extensions: 139694
Number of successful extensions: 408
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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