Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C02
(419 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 104 3e-23
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 44 7e-05
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 44 7e-05
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 44 7e-05
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 44 7e-05
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 42 2e-04
10_08_0620 - 19321612-19323237 37 0.008
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 36 0.010
04_04_0729 + 27612106-27612195,27612284-27612370,27612469-276125... 35 0.031
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 34 0.040
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351... 28 2.7
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 28 3.5
04_04_0200 - 23529497-23531938,23532586-23533720,23534272-235344... 27 4.6
07_03_0297 - 16383159-16383626 27 8.1
04_04_0929 - 29474540-29475247,29475485-29475850,29476032-294760... 27 8.1
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 104 bits (250), Expect = 3e-23
Identities = 57/141 (40%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
P AK++VLA + Q E+GDG N I + SEI GY +A++K +
Sbjct: 76 PAAKILVLAGRAQQEEIGDGANLTISFAGELLEKAEELIRMGLHPSEIIIGYTKAINKTV 135
Query: 182 ELLPGLV--CSEVKDVKDIQEVTKAIRPAIMSKQYGNEDFIAELVAKACVGILPEK-TTF 352
E+L LV SE DV++ +EV +R A+ SKQ+G ED + LVA AC+ + P+ F
Sbjct: 136 EILEDLVEKGSENMDVRNKEEVVLLMRSAVASKQFGQEDILCPLVADACMQVCPKNPANF 195
Query: 353 NVDNVRICQILGAGLLQSEVL 415
NVDNVR+ ++LG GL S V+
Sbjct: 196 NVDNVRVAKLLGGGLHNSSVV 216
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 43.6 bits (98), Expect = 7e-05
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
P AK++V ++ QDSEVGDGT V++ V + Y A +
Sbjct: 77 PAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPYIEDGVHPHSLIRSYRTAGHLAI 136
Query: 182 ELLPGLVCS-EVKDVKDIQE-VTKAIRPAIMSKQYGNE-DFIAELVAKACVGI 331
E + L S E K +++ +E + K + SK G E +F A +V A + I
Sbjct: 137 EKVKDLATSIEGKSLEEKKELLAKCAATTLSSKLIGGEKEFFASMVVDAVLAI 189
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 43.6 bits (98), Expect = 7e-05
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 2/138 (1%)
Frame = +2
Query: 8 AKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCLEL 187
AKLMV S QD E+GDGT V+V + IA+GYE A +
Sbjct: 84 AKLMVELSCSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYELASRIAFDH 143
Query: 188 LPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGN-EDFIAELVAKACVGILP-EKTTFNVD 361
L + +I+ + + + SK + +AE+ KA + + E+ N+D
Sbjct: 144 LEHISHKFEFSATNIEPLVQTCMTTLSSKIVNRCKRTLAEIAVKAVLAVADLERKDVNLD 203
Query: 362 NVRICQILGAGLLQSEVL 415
+++ +G L +E++
Sbjct: 204 LIKVEGKVGGKLEDTELV 221
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 43.6 bits (98), Expect = 7e-05
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
P AK++V S++QD EVGDGT V+V + I GY A++
Sbjct: 72 PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVNMKIHPMTIIAGYRMAVECAR 131
Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGNED--FIAELVAKACVGILPEKTTFN 355
L +++ + I +S + ++D + AEL A +L K + N
Sbjct: 132 NALLERTMDNKENIDKFRSDLMNIAMTTLSSKILSQDKEYFAELAVDA---VLRLKGSTN 188
Query: 356 VDNVRICQILGAGLLQS 406
++ ++I +I G L S
Sbjct: 189 LEAIQILKIPGGSLKDS 205
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 43.6 bits (98), Expect = 7e-05
Identities = 34/107 (31%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
P AK M+ S+ QD EVGDGT VIV + I Y +ALD L
Sbjct: 75 PAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAQAFIDKNYHPTVICRAYTKALDDAL 134
Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGN-EDFIAELVAKA 319
+L + DV D + ++ +I +K G D IA+L A
Sbjct: 135 SVLDKIAIP--VDVDDRVAMLGLVKSSIGTKFTGQFGDLIADLAIDA 179
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 42.3 bits (95), Expect = 2e-04
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
P AK M+ S+ QD EVGDGT VIV + I Y +AL+ L
Sbjct: 75 PAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFIDKHYHPTVICRAYTKALEDAL 134
Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGN-EDFIAELVAKA 319
+L + DV D + ++ +I +K G D IA+L A
Sbjct: 135 AVLDKIAMH--VDVNDRAAMLGLVKSSIGTKFTGQFGDLIADLAIDA 179
>10_08_0620 - 19321612-19323237
Length = 541
Score = 36.7 bits (81), Expect = 0.008
Identities = 28/141 (19%), Positives = 59/141 (41%), Gaps = 3/141 (2%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
P A+++ S+ QD+ GDGT V+V + AD + +
Sbjct: 84 PAARMLADLSRSQDAAAGDGTTTVVVLAGSLLRRAQSLLSAGAHPTAAADALHLLAARAV 143
Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGN-EDFIAELVAKACVGILPEKTTFNV 358
E+L G+ ++ D + K+ A+ SK ++ L A + ++ + +
Sbjct: 144 EVLHGMAIP--VELSDRDALVKSASTALNSKVVSQYSTLLSPLAVDAALAVVDPAHPYLL 201
Query: 359 D--NVRICQILGAGLLQSEVL 415
D ++R+ + LG + +E++
Sbjct: 202 DLRDIRVVKKLGCTVDDTELI 222
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 36.3 bits (80), Expect = 0.010
Identities = 27/141 (19%), Positives = 58/141 (41%), Gaps = 3/141 (2%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
P A+++ S+ QD+ GDGT V+V + AD R + +
Sbjct: 80 PAARMLAELSRSQDAAAGDGTTTVVVLAGSLLRRAQSLLSAGAHPTAAADALHRLATRAV 139
Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGN-EDFIAELVAKACVGIL--PEKTTF 352
E+L + ++ D + K+ A+ SK ++ L A + ++
Sbjct: 140 EVLHAMAIP--IELSDRDSLVKSASTALNSKVVSQYSSLLSPLAVDAALSVVDPAHPDLL 197
Query: 353 NVDNVRICQILGAGLLQSEVL 415
++ ++R+ + LG + +E++
Sbjct: 198 DLRDIRVVKKLGGTVDDTELI 218
>04_04_0729 +
27612106-27612195,27612284-27612370,27612469-27612528,
27612554-27612688,27612769-27612864,27613149-27613214,
27613647-27613864,27614093-27614189,27614605-27614691,
27614892-27615026,27615121-27615225,27615717-27615845,
27615925-27616028,27616598-27616688,27616774-27616857
Length = 527
Score = 34.7 bits (76), Expect = 0.031
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGY 157
P AK++V +++QD EVGDGT V++ + + I GY
Sbjct: 27 PAAKVLVELAELQDREVGDGTTSVVIIAAELLKRGNDLVRNKIHPTSIISGY 78
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 34.3 bits (75), Expect = 0.040
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIV 79
P AK++V S++QD EVGDGT V+V
Sbjct: 73 PAAKVLVDISKVQDDEVGDGTTSVVV 98
>12_01_0445 -
3513733-3513819,3514392-3514613,3514730-3514999,
3515033-3517110,3517649-3517976,3519136-3519255,
3519299-3519352,3520115-3520154,3520344-3520411
Length = 1088
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/70 (22%), Positives = 37/70 (52%)
Frame = +2
Query: 161 RALDKCLELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGNEDFIAELVAKACVGILPE 340
R++ E + +CS +V ++++ KA+ + ++ +ED A+L AK +
Sbjct: 763 RSVQTVKESMEAQLCSSNTEVLKLRDIVKALENEVEKEKALHEDLSAQLEAK-----IEA 817
Query: 341 KTTFNVDNVR 370
+ TF+V+ ++
Sbjct: 818 ERTFSVEAIK 827
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 283 K*RFYC*TCSKGMCRYLA*ENYFQCR*C 366
K +F+C C G+CR ENYF C C
Sbjct: 116 KGQFHCYDC--GICRVGGKENYFHCAKC 141
>04_04_0200 -
23529497-23531938,23532586-23533720,23534272-23534463,
23535527-23535570
Length = 1270
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 135 VVTPNWSSSSADSNRAPERTMTKLV 61
V P+W S + DS+R P KLV
Sbjct: 225 VAVPSWRSKNLDSSREPSEKKCKLV 249
>07_03_0297 - 16383159-16383626
Length = 155
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 152 GYERALDKCLELLPGLVCSEVKDVKDIQEVTKAIR 256
GY AL CL+ G + + +VK +E +AIR
Sbjct: 21 GYANALSLCLQRKDGGILEAMLEVKSTKEKFQAIR 55
>04_04_0929 -
29474540-29475247,29475485-29475850,29476032-29476093,
29476191-29476302,29476401-29476529,29476724-29476738
Length = 463
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 141 SLVVTPNWSSSSADSNRAPERTMTKLVPSPTSESCI 34
S+ T +S + +S R R ++VPSP S C+
Sbjct: 386 SVPETATHNSETTESYRNGNRNEDEMVPSPDSRKCV 421
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,911,210
Number of Sequences: 37544
Number of extensions: 139694
Number of successful extensions: 408
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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