Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C02
(419 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 1e-11
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 43 9e-05
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 42 2e-04
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 34 0.042
SB_341| Best HMM Match : Shugoshin_C (HMM E-Value=0.073) 29 1.2
SB_58307| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_14327| Best HMM Match : NHL (HMM E-Value=0) 27 6.3
>SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 66.1 bits (154), Expect = 1e-11
Identities = 34/71 (47%), Positives = 50/71 (70%)
Frame = +2
Query: 203 CSEVKDVKDIQEVTKAIRPAIMSKQYGNEDFIAELVAKACVGILPEKTTFNVDNVRICQI 382
CS++ +++D +EVTKAI+ A+ SKQ + + + V ILPEK TFNVDNVR+ +I
Sbjct: 3 CSKLTNIRDEKEVTKAIKTAVSSKQIRSIKNDNNMRFSS-VSILPEKATFNVDNVRVAKI 61
Query: 383 LGAGLLQSEVL 415
LG+G+ SEV+
Sbjct: 62 LGSGIHNSEVV 72
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 43.2 bits (97), Expect = 9e-05
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 2/137 (1%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
P AK++V S++QD EVGDGT V V + I G+ +++
Sbjct: 76 PAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGWRKSVKAAE 135
Query: 182 ELLPGLVCSEVKDVKDIQE-VTKAIRPAIMSK-QYGNEDFIAELVAKACVGILPEKTTFN 355
+ L D + +E + R + SK + D A+L A +L K + +
Sbjct: 136 KALEAAAVDHSSDPEKFREDLMNIARTTLSSKILVQHRDHFAKLAVDA---VLRLKGSGD 192
Query: 356 VDNVRICQILGAGLLQS 406
++ ++I + LG G++ S
Sbjct: 193 LNAIQIIKKLGGGMVDS 209
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/59 (40%), Positives = 29/59 (49%)
Frame = +2
Query: 8 AKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCLE 184
AKLMV S+ QD+E+GDGT V+V + IADGYE A LE
Sbjct: 86 AKLMVELSKSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAKIALE 144
>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
P AK M+ S+ QD EVGDGT VI+ + ++I Y A+D +
Sbjct: 17 PAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLAMDDMI 76
Query: 182 ELLPGLVCSEVK 217
++L + E++
Sbjct: 77 DILKQQIREELQ 88
>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
P AK M+ S+ QD EVGDGT VI+ + ++I Y A+D +
Sbjct: 214 PAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLAMDDMI 273
Query: 182 ELLPGLVCSEVK 217
++L + E++
Sbjct: 274 DILKQQIREELQ 285
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 34.3 bits (75), Expect = 0.042
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 2/128 (1%)
Frame = +2
Query: 29 SQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCLELLPGLVCS 208
S++QD EVGDGT V V + I G+ +++ + L
Sbjct: 3 SKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAVD 62
Query: 209 EVKDVKDIQ-EVTKAIRPAIMSK-QYGNEDFIAELVAKACVGILPEKTTFNVDNVRICQI 382
D + + ++ R + SK + D A+L A +L K + +++ ++I +
Sbjct: 63 HSSDPEKFRDDLMNIARTTLSSKILVQHRDHFAKLAVDA---VLRLKGSGDLNAIQIIKK 119
Query: 383 LGAGLLQS 406
LG G++ S
Sbjct: 120 LGGGMVDS 127
>SB_341| Best HMM Match : Shugoshin_C (HMM E-Value=0.073)
Length = 222
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3
Query: 120 WSSSSADSNRAPERTMTKLVPSPTSES 40
W+ S D +RAP T++ ++PSP S+S
Sbjct: 32 WAYLSYDPSRAPYETVSYVLPSPRSKS 58
>SB_58307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3
Query: 120 WSSSSADSNRAPERTMTKLVPSPTSES 40
W+ S D +RAP T++ ++PSP S+S
Sbjct: 32 WAYLSYDPSRAPYETVSYVLPSPRSKS 58
>SB_14327| Best HMM Match : NHL (HMM E-Value=0)
Length = 725
Score = 27.1 bits (57), Expect = 6.3
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 289 RFYC*TCSKGMCR 327
+FYC +C+KG+CR
Sbjct: 164 KFYCESCAKGICR 176
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,449,564
Number of Sequences: 59808
Number of extensions: 165090
Number of successful extensions: 466
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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