Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C02
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024827-1|AAF60806.2|  581|Caenorhabditis elegans Hypothetical ...   136   6e-33
Z66500-12|CAA91308.1|  549|Caenorhabditis elegans Hypothetical p...    52   2e-07
U07941-1|AAB05072.1|  549|Caenorhabditis elegans CCT-1 protein.        52   2e-07
Z68318-10|CAA92697.1|  529|Caenorhabditis elegans Hypothetical p...    47   5e-06
U25632-1|AAA93233.1|  529|Caenorhabditis elegans CCT-2 protein.        47   5e-06
AL031268-2|CAA20331.1|  529|Caenorhabditis elegans Hypothetical ...    47   5e-06
Z35599-3|CAA84660.1|  542|Caenorhabditis elegans Hypothetical pr...    45   2e-05
Z32840-7|CAA83681.1|  542|Caenorhabditis elegans Hypothetical pr...    45   2e-05
U25698-1|AAA92843.1|  542|Caenorhabditis elegans CCT-5 protein.        45   2e-05
AF067947-11|AAO25994.1|  455|Caenorhabditis elegans Hypothetical...    34   0.047
AF067947-10|AAC19232.2|  535|Caenorhabditis elegans Hypothetical...    34   0.047
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr...    33   0.083
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z54342-4|CAA91150.1|  447|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>AC024827-1|AAF60806.2|  581|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.3 protein.
          Length = 581

 Score =  136 bits (329), Expect = 6e-33
 Identities = 64/140 (45%), Positives = 94/140 (67%), Gaps = 1/140 (0%)
 Frame = +2

Query: 2   PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
           P A+++++A++MQ+ ++GD TN V++                +T  E+A GYE+A +K L
Sbjct: 80  PAARIIIMATEMQEKQIGDNTNTVVILAAALLEHAANLIHMGMTPQEVAAGYEQAAEKAL 139

Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGNEDFIAELVAKACVGILPEKT-TFNV 358
           E+LP LV  E  D+K+I+EV + IR AI SKQY NED IA+LVAKACV   P  +  FNV
Sbjct: 140 EILPTLVVKEATDMKNIEEVRQYIRSAITSKQYDNEDIIADLVAKACVTTCPANSFNFNV 199

Query: 359 DNVRICQILGAGLLQSEVLS 418
           DN+RIC+I+G+G+  S V++
Sbjct: 200 DNIRICKIIGSGVHTSTVMN 219


>Z66500-12|CAA91308.1|  549|Caenorhabditis elegans Hypothetical
           protein T05C12.7 protein.
          Length = 549

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 4/139 (2%)
 Frame = +2

Query: 2   PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
           P  K++V  +Q+QD EVGDGT  V++                V  + I +GY  A  + +
Sbjct: 74  PAGKVLVELAQLQDEEVGDGTTSVVIVAAELLKRADELVKQKVHPTTIINGYRLACKEAV 133

Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYG-NEDFIAELVAKACVGILPE---KTT 349
           + +   + S   D    Q V  A + ++ SK  G + DF  ELV  A   +  E   K T
Sbjct: 134 KYISENI-SFTSDSIGRQSVVNAAKTSMSSKIIGPDADFFGELVVDAAEAVRVENNGKVT 192

Query: 350 FNVDNVRICQILGAGLLQS 406
           + ++ V + +  G    +S
Sbjct: 193 YPINAVNVLKAHGKSARES 211


>U07941-1|AAB05072.1|  549|Caenorhabditis elegans CCT-1 protein.
          Length = 549

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 4/139 (2%)
 Frame = +2

Query: 2   PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
           P  K++V  +Q+QD EVGDGT  V++                V  + I +GY  A  + +
Sbjct: 74  PAGKVLVELAQLQDEEVGDGTTSVVIVAAELLKRADELVKQKVHPTTIINGYRLACKEAV 133

Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYG-NEDFIAELVAKACVGILPE---KTT 349
           + +   + S   D    Q V  A + ++ SK  G + DF  ELV  A   +  E   K T
Sbjct: 134 KYISENI-SFTSDSIGRQSVVNAAKTSMSSKIIGPDADFFGELVVDAAEAVRVENNGKVT 192

Query: 350 FNVDNVRICQILGAGLLQS 406
           + ++ V + +  G    +S
Sbjct: 193 YPINAVNVLKAHGKSARES 211


>Z68318-10|CAA92697.1|  529|Caenorhabditis elegans Hypothetical
           protein T21B10.7 protein.
          Length = 529

 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
 Frame = +2

Query: 2   PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
           P AK++V  S  QD EVGDGT  V V                +    I  GY RAL    
Sbjct: 76  PAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQTIISGYRRALGIAQ 135

Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYG-NEDFIAELVAKACVGILPEKTTFNV 358
           E L         +++D  ++ K  R  + SK    +++  A+L   A   +L  K + N+
Sbjct: 136 ESLKKSSIESGDNIRD--DLLKIARTTLGSKILSQHKEHFAQLAVDA---VLRLKGSGNL 190

Query: 359 DNVRICQILGAGLLQS 406
           D ++I + LG  + +S
Sbjct: 191 DAIQIIKKLGGSMNES 206


>U25632-1|AAA93233.1|  529|Caenorhabditis elegans CCT-2 protein.
          Length = 529

 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
 Frame = +2

Query: 2   PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
           P AK++V  S  QD EVGDGT  V V                +    I  GY RAL    
Sbjct: 76  PAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQTIISGYRRALGIAQ 135

Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYG-NEDFIAELVAKACVGILPEKTTFNV 358
           E L         +++D  ++ K  R  + SK    +++  A+L   A   +L  K + N+
Sbjct: 136 ESLKKSSIESGDNIRD--DLLKIARTTLGSKILSQHKEHFAQLAVDA---VLRLKGSGNL 190

Query: 359 DNVRICQILGAGLLQS 406
           D ++I + LG  + +S
Sbjct: 191 DAIQIIKKLGGSMNES 206


>AL031268-2|CAA20331.1|  529|Caenorhabditis elegans Hypothetical
           protein T21B10.7 protein.
          Length = 529

 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
 Frame = +2

Query: 2   PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
           P AK++V  S  QD EVGDGT  V V                +    I  GY RAL    
Sbjct: 76  PAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQTIISGYRRALGIAQ 135

Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYG-NEDFIAELVAKACVGILPEKTTFNV 358
           E L         +++D  ++ K  R  + SK    +++  A+L   A   +L  K + N+
Sbjct: 136 ESLKKSSIESGDNIRD--DLLKIARTTLGSKILSQHKEHFAQLAVDA---VLRLKGSGNL 190

Query: 359 DNVRICQILGAGLLQS 406
           D ++I + LG  + +S
Sbjct: 191 DAIQIIKKLGGSMNES 206


>Z35599-3|CAA84660.1|  542|Caenorhabditis elegans Hypothetical
           protein C07G2.3a protein.
          Length = 542

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 28/89 (31%), Positives = 45/89 (50%)
 Frame = +2

Query: 8   AKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCLEL 187
           AKLMV  S+ QD E+GDGT  V+V                +   +IADG++ A  K LE 
Sbjct: 89  AKLMVELSKSQDHEIGDGTTGVVVLAGALLEEAEKLIDRGIHPIKIADGFDLACKKALET 148

Query: 188 LPGLVCSEVKDVKDIQEVTKAIRPAIMSK 274
           L  +  S+   V++ + + +  + ++ SK
Sbjct: 149 LDSI--SDKFPVENRERLVETAQTSLGSK 175


>Z32840-7|CAA83681.1|  542|Caenorhabditis elegans Hypothetical
           protein C07G2.3a protein.
          Length = 542

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 28/89 (31%), Positives = 45/89 (50%)
 Frame = +2

Query: 8   AKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCLEL 187
           AKLMV  S+ QD E+GDGT  V+V                +   +IADG++ A  K LE 
Sbjct: 89  AKLMVELSKSQDHEIGDGTTGVVVLAGALLEEAEKLIDRGIHPIKIADGFDLACKKALET 148

Query: 188 LPGLVCSEVKDVKDIQEVTKAIRPAIMSK 274
           L  +  S+   V++ + + +  + ++ SK
Sbjct: 149 LDSI--SDKFPVENRERLVETAQTSLGSK 175


>U25698-1|AAA92843.1|  542|Caenorhabditis elegans CCT-5 protein.
          Length = 542

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 28/89 (31%), Positives = 45/89 (50%)
 Frame = +2

Query: 8   AKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCLEL 187
           AKLMV  S+ QD E+GDGT  V+V                +   +IADG++ A  K LE 
Sbjct: 89  AKLMVELSKSQDHEIGDGTTGVVVLAGALLEEAEKLIDRGIHPIKIADGFDLACKKALET 148

Query: 188 LPGLVCSEVKDVKDIQEVTKAIRPAIMSK 274
           L  +  S+   V++ + + +  + ++ SK
Sbjct: 149 LDSI--SDKFPVENRERLVETAQTSLGSK 175


>AF067947-11|AAO25994.1|  455|Caenorhabditis elegans Hypothetical
           protein T10B5.5b protein.
          Length = 455

 Score = 33.9 bits (74), Expect = 0.047
 Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 1/139 (0%)
 Frame = +2

Query: 2   PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
           P A  MV  ++ QD+EVGDGT  V+V                V    +     +A +K L
Sbjct: 74  PAASTMVDIARSQDAEVGDGTTSVVVLAAEILKQMKPFIEDGVHPQLLIRAIGKACEKTL 133

Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGNED-FIAELVAKACVGILPEKTTFNV 358
           + L  L      + +  + + K     + SK    E  F A ++  A V  L      N+
Sbjct: 134 KNLADLEIKINGETELREMLVKCAATTLSSKLVSQERLFFANMIVDA-VNTLDAHLPLNM 192

Query: 359 DNVRICQILGAGLLQSEVL 415
             + I ++ G  L +S ++
Sbjct: 193 --IGIKKVNGGNLHESRLI 209


>AF067947-10|AAC19232.2|  535|Caenorhabditis elegans Hypothetical
           protein T10B5.5a protein.
          Length = 535

 Score = 33.9 bits (74), Expect = 0.047
 Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 1/139 (0%)
 Frame = +2

Query: 2   PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
           P A  MV  ++ QD+EVGDGT  V+V                V    +     +A +K L
Sbjct: 74  PAASTMVDIARSQDAEVGDGTTSVVVLAAEILKQMKPFIEDGVHPQLLIRAIGKACEKTL 133

Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGNED-FIAELVAKACVGILPEKTTFNV 358
           + L  L      + +  + + K     + SK    E  F A ++  A V  L      N+
Sbjct: 134 KNLADLEIKINGETELREMLVKCAATTLSSKLVSQERLFFANMIVDA-VNTLDAHLPLNM 192

Query: 359 DNVRICQILGAGLLQSEVL 415
             + I ++ G  L +S ++
Sbjct: 193 --IGIKKVNGGNLHESRLI 209


>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical protein
            C32E12.4 protein.
          Length = 1553

 Score = 33.1 bits (72), Expect = 0.083
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 275  QYGNEDFIAELVAKACVGILPEKTTFNVDNVRI 373
            Q   E  + EL+ +AC G +PE+T F +D V +
Sbjct: 905  QLMTESLVEELIEEACYGEIPEETLFALDEVEV 937


>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical protein
            C14C10.5 protein.
          Length = 1908

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 158  ERALDKCLELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGNE 289
            + ALD  + L+  L+     DVK IQE    +R   M++ Y  E
Sbjct: 917  QMALDCTIGLIDWLLEHSPDDVKSIQEAISILRGLPMNRGYTKE 960


>Z54342-4|CAA91150.1|  447|Caenorhabditis elegans Hypothetical
           protein C08H9.7 protein.
          Length = 447

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 298 NKIFISVLFRHYS-WPNSFSDFLNVLDIFNFRTYKSRK 188
           N+  IS+L    S W   F DFL  +D FN  + + R+
Sbjct: 242 NEYIISLLVPKKSYWSFDFEDFLKFVDFFNIYSTQFRE 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,908,142
Number of Sequences: 27780
Number of extensions: 132252
Number of successful extensions: 453
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)