Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C02
(419 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 105 1e-23
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 51 3e-07
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 51 3e-07
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 47 5e-06
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 44 3e-05
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 44 4e-05
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 40 5e-04
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 38 0.003
At2g44930.1 68415.m05593 expressed protein contains Pfam profile... 29 0.97
At5g18650.1 68418.m02214 zinc finger (C3HC4-type RING finger) fa... 27 3.9
At5g03250.1 68418.m00274 phototropic-responsive NPH3 family prot... 27 6.8
At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger) fa... 26 9.0
At3g04160.1 68416.m00440 expressed protein ; expression supporte... 26 9.0
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 105 bits (252), Expect = 1e-23
Identities = 57/138 (41%), Positives = 78/138 (56%), Gaps = 3/138 (2%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
P AKL+VLA++ Q E+GDG N I + SEI GY +A+ K +
Sbjct: 81 PAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGYTKAVSKAV 140
Query: 182 ELLPGLV--CSEVKDVKDIQEVTKAIRPAIMSKQYGNEDFIAELVAKACVGILPEK-TTF 352
E+L LV SE DV++ EV +R A+ SKQ+G E+ I LV AC+ + P+ T F
Sbjct: 141 EILEQLVETGSETMDVRNKDEVISRMRAAVASKQFGQEEIICSLVTDACIQVCPKNPTNF 200
Query: 353 NVDNVRICQILGAGLLQS 406
NVDNVR+ ++LG GL S
Sbjct: 201 NVDNVRVSKLLGGGLHNS 218
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 51.2 bits (117), Expect = 3e-07
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Frame = +2
Query: 8 AKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCLEL 187
AKLMV S+ QD E+GDGT V+V + IA+GYE A +E
Sbjct: 8 AKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEH 67
Query: 188 LPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGN-EDFIAELVAKACVGILP-EKTTFNVD 361
L + DV + + + + + SK + +AE+ KA + + E+ N+D
Sbjct: 68 LERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLD 127
Query: 362 NVRICQILGAGLLQSEVL 415
+++ +G L +E++
Sbjct: 128 LIKVEGKVGGKLEDTELI 145
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 51.2 bits (117), Expect = 3e-07
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Frame = +2
Query: 8 AKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCLEL 187
AKLMV S+ QD E+GDGT V+V + IA+GYE A +E
Sbjct: 84 AKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEH 143
Query: 188 LPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGN-EDFIAELVAKACVGILP-EKTTFNVD 361
L + DV + + + + + SK + +AE+ KA + + E+ N+D
Sbjct: 144 LERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLD 203
Query: 362 NVRICQILGAGLLQSEVL 415
+++ +G L +E++
Sbjct: 204 LIKVEGKVGGKLEDTELI 221
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 47.2 bits (107), Expect = 5e-06
Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
P AK++V +++QD EVGDGT V++ + + I GY A+ +
Sbjct: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESC 132
Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQY-GNEDFIAELVAKACVGI 331
+ + + ++V+ + + + A + ++ SK G+ DF A LV +A + +
Sbjct: 133 KYIEEKLVTKVEKLGKVPLINCA-KTSMSSKLISGDSDFFANLVVEAVLSV 182
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 44.4 bits (100), Expect = 3e-05
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 6/144 (4%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
P AK M+ S+ QD EVGDGT VIV + I Y +AL+ +
Sbjct: 73 PAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAYIKALEDSI 132
Query: 182 ELLPGLVCS-EVKDVKDIQEVTKAIRPAIMSKQYGNEDFIAELV--AKACVGILPEKTTF 352
+L + S ++ D + + K+ + Q+G D IA+L A VG+ +
Sbjct: 133 AVLDKIAMSIDINDRSQVLGLVKSCIGTKFTSQFG--DLIADLAIDATTTVGVDLGQGLR 190
Query: 353 NVD---NVRICQILGAGLLQSEVL 415
VD +++ ++ G SEVL
Sbjct: 191 EVDIKKYIKVEKVPGGQFEDSEVL 214
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 44.0 bits (99), Expect = 4e-05
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 3/132 (2%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
P AK++V S+ QDS GDGT V+V + + I+D +A K +
Sbjct: 82 PAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAI 141
Query: 182 ELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGN-EDFIAELVAKACVGIL-PEKTTF- 352
++L + ++ D + K+ ++ SK +A L A + ++ PEK
Sbjct: 142 DILTAMAVP--VELTDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVIDPEKPEIV 199
Query: 353 NVDNVRICQILG 388
++ +++I + LG
Sbjct: 200 DLRDIKIVKKLG 211
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 40.3 bits (90), Expect = 5e-04
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
P AK++V ++ QDSEVGDGT V++ V + Y A +
Sbjct: 77 PAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSYRTASTLAI 136
Query: 182 ELLPGLVCS-EVKDVKDIQE-VTKAIRPAIMSKQYGNE-DFIAELVAKACVGI 331
+ L S E K V++ + + K + SK G E +F A +V A + I
Sbjct: 137 AKVKELAVSIEGKSVEEKKGLLAKCAATTLSSKLIGGEKEFFATMVVDAVMAI 189
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 37.9 bits (84), Expect = 0.003
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 3/138 (2%)
Frame = +2
Query: 2 PRAKLMVLASQMQDSEVGDGTNFVIVXXXXXXXXXXXXXXXXVTTSEIADGYERALDKCL 181
P AK++V S++QD EVGDGT V+V + I GY R +C
Sbjct: 74 PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGY-RMASECA 132
Query: 182 E--LLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYG-NEDFIAELVAKACVGILPEKTTF 352
LL ++ ++ K ++ K + SK +++ AE+ A + K +
Sbjct: 133 RNALLKRVIDNKDNAEKFRSDLLKIAMTTLCSKILSQDKEHFAEMAVDA---VFRLKGST 189
Query: 353 NVDNVRICQILGAGLLQS 406
N++ ++I + G L S
Sbjct: 190 NLEAIQIIKKPGGSLKDS 207
>At2g44930.1 68415.m05593 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 515
Score = 29.5 bits (63), Expect = 0.97
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +2
Query: 164 ALDKCLELLPGLVCSEVKDVKDI----QEVTKAIRPAIMSKQYGNEDFIAELVAKACVGI 331
AL++C L VC+ + + + Q+V ++ ++ G++ +AE+V K C+G+
Sbjct: 375 ALEQCHYPLTAYVCNYIAFLDFLIDTDQDVDLLVKKGVIKNWLGHQASVAEMVNKLCLGL 434
Query: 332 L 334
+
Sbjct: 435 V 435
>At5g18650.1 68418.m02214 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 267
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 283 K*RFYC*TCSKGMCRYLA*ENYFQCR*C 366
K +F+C C G+CR EN+F C+ C
Sbjct: 105 KQQFHCDDC--GICRVGGRENFFHCKKC 130
>At5g03250.1 68418.m00274 phototropic-responsive NPH3 family protein
contains some similarity to root phototropism RPT2
[Arabidopsis thaliana] gi|6959488|gb|AAF33112, a signal
transducer of phototropic response PMID:10662859
Length = 592
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 302 ELVAKACVGILPEKTTFNVDNVR 370
ELV K C G+ E T FNV ++R
Sbjct: 83 ELVTKFCYGVKIELTAFNVVSLR 105
>At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles:PF05495 CHY zinc
finger, PF00097 zinc finger, C3HC4 type (RING finger)
Length = 291
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 283 K*RFYC*TCSKGMCRYLA*ENYFQCR*CQ 369
K +++C C G+CR EN+F C+ C+
Sbjct: 115 KKQYHCDEC--GICRTGGEENFFHCKRCR 141
>At3g04160.1 68416.m00440 expressed protein ; expression supported
by MPSS
Length = 712
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +2
Query: 167 LDKCLELLPGLVCSEVKDVKDIQEVTKAIRPAIMSKQYGNE 289
LDKCL +LP +C+ ++ ++ + +++S G++
Sbjct: 216 LDKCLGVLPSDLCAMKNEIDQWRDFPSSYSSSVLSSIVGSK 256
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,442,639
Number of Sequences: 28952
Number of extensions: 123248
Number of successful extensions: 355
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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