Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C01
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   206   2e-54
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   201   5e-53
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   1.5  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   1.9  
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    27   1.9  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   3.4  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   5.9  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   5.9  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   7.7  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   7.7  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    25   7.7  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  206 bits (503), Expect = 2e-54
 Identities = 101/181 (55%), Positives = 132/181 (72%)
 Frame = +2

Query: 17  KXIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGS 196
           + I  ++ + IPE ++V +K+RLVTVKGPRGVLK+N + + ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGS 61

Query: 197 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKYI 376
           +K  A +RT  S + NMI GVT+GF+YKMR VYAHFPIN   TE  T++EIRNFLGE+  
Sbjct: 62  RKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121

Query: 377 RRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSE 556
           R +K  PGVTV  S   KDE+IIEGNSLE+VS SAA I+Q   V+NKDIRKFLDG+YVSE
Sbjct: 122 RVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSE 181

Query: 557 K 559
           +
Sbjct: 182 R 182


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  201 bits (491), Expect = 5e-53
 Identities = 98/181 (54%), Positives = 131/181 (72%)
 Frame = +2

Query: 17  KXIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGS 196
           + I  ++ + IP+ +TV +K+R VTV GPRG LK+N +H+ ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGS 61

Query: 197 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKYI 376
           +K  A +R+V S + NMI GVT+GF+YKMR VYAHFPIN   TE  T++EIRNFLGE+  
Sbjct: 62  RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121

Query: 377 RRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSE 556
           R +K  PGVTV  S   KDE+I+EGNSLE+VS SAA I+Q   V+NKDIRKFLDG+YVSE
Sbjct: 122 RVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSE 181

Query: 557 K 559
           +
Sbjct: 182 R 182


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 19/90 (21%), Positives = 44/90 (48%)
 Frame = +2

Query: 77   SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMIKG 256
            S+L  +   + ++ RN + L++  ++VN     +E W G +   +AV T  + ++++ + 
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169

Query: 257  VTKGFQYKMRAVYAHFPINCVTTEGNTIIE 346
            ++K     +        + CV T   TI++
Sbjct: 1170 LSKIPTNLLDLPMFQVYLGCVDTLIQTIVK 1199


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 413 NSPKQKDELIIEGNSLEDVSSSAALIQQS 499
           +SPK+K +L ++G  L+ +  + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = +2

Query: 458 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTT 565
           + D+S+SA    + T + N+++ K  +GL+++ +T+
Sbjct: 78  MSDISNSACRASKITALNNRELYKDDNGLFITVQTS 113


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 424 TKG*TDHRRKLIRRCIQ-FSCPDPTINDSKEQGYQKVLGRSLC 549
           T G +     +++ CIQ +S P P   DSK      VL  SLC
Sbjct: 427 TMGFSAESMDVVQACIQNYSTPIPLSEDSKTLVRNLVLALSLC 469


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 223 SMLSCRKHDQRCDQGIPIQDACSVRSFPYQLCHH--*GKHNY 342
           S L+CR+   +CD G P  + C  RS   Q C +   GK NY
Sbjct: 22  SCLACRRKKLKCDHGRPCSN-CLKRS-TIQSCIYIDPGKTNY 61


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 210 ASSFLEPNHFSTFNWRGLTMRMSTAKCLKF 121
           +SS   PNH ++   RGLT   ST    K+
Sbjct: 278 SSSNTSPNHLASVPNRGLTSNSSTGSFTKY 307


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 462 SNEFPSMISSSFCLGELTTVTPGAIFTLLMYF 367
           SN   + I  SFC   LTT+ P   ++ L+YF
Sbjct: 635 SNPSATFIDFSFC--PLTTIDPAFSYSNLVYF 664


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 112 NSARTFHCHQTRFHMDGETLRNLH 41
           +S R FH  Q+ FH++G    N++
Sbjct: 573 HSVRFFHAIQSHFHLEGPIRYNMN 596


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 42  TFWFATXCFILGLC 1
           TFWF + C IL +C
Sbjct: 281 TFWFQSICLILYIC 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,124
Number of Sequences: 5004
Number of extensions: 49944
Number of successful extensions: 149
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)