Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C01
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    235   1e-62
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   227   6e-60
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304...    30   1.5  
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254...    29   3.4  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     29   3.4  
03_01_0567 + 4186620-4186694,4186766-4186852,4187293-4187932,418...    28   6.0  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  235 bits (576), Expect = 1e-62
 Identities = 110/185 (59%), Positives = 146/185 (78%), Gaps = 1/185 (0%)
 Frame = +2

Query: 14  MKXIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RQLKVEKWF 190
           MK I+A++ ++IPE +TV V +++VTV+GPRG L RNFKHL +D +++   R+L+V+ WF
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 191 GSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEK 370
           G+++ +AA+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  NT IEIRNFLGEK
Sbjct: 61  GTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 120

Query: 371 YIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYV 550
            +R+V M  GVT++ S K KDEL+++GN +E VS SAALI Q   VKNKDIRKFLDG+YV
Sbjct: 121 KVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 180

Query: 551 SEKTT 565
           S+K T
Sbjct: 181 SDKGT 185


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  227 bits (554), Expect = 6e-60
 Identities = 106/178 (59%), Positives = 139/178 (78%), Gaps = 3/178 (1%)
 Frame = +2

Query: 41  VKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP---RQLKVEKWFGSKKELA 211
           ++IP  +TVHV +++VTV+GPRG L RNFKHL +D +++     R+L+V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 212 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKYIRRVKM 391
           A+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  NT IEIRNFLGEK +R+V M
Sbjct: 61  AIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDM 120

Query: 392 APGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTT 565
             GVT++ S K KDEL+++GN +E VS SAALI Q   VKNKDIRKFLDG+YVS+K T
Sbjct: 121 LEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGT 178


>10_08_0943 +
           21728294-21728675,21728767-21728840,21729469-21730443,
           21730617-21730683,21730765-21730827,21731001-21731064,
           21731162-21731255,21731352-21731435,21731523-21731612,
           21731708-21731735,21732117-21732596,21732679-21732740,
           21732820-21732929,21733014-21733101,21733228-21733557,
           21733782-21733904
          Length = 1037

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 370 LFTKEVTDLNNCVSLSGDTVDRE 302
           L  KEVTD++ C+++   TVDRE
Sbjct: 219 LVPKEVTDMSGCINIFHATVDRE 241


>06_03_0970 +
           26424209-26424910,26425053-26425109,26425251-26425478,
           26425788-26425881,26425955-26426161,26426581-26426711,
           26426943-26426992,26427125-26427432,26427548-26427651,
           26427810-26428526,26429159-26429338,26429703-26429831
          Length = 968

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +1

Query: 145 HSHG*SSPVESGEMVRF*KRTSCC*DSMLSCRKHDQRCDQGIPIQD 282
           HS   S+P  + E   F      C +  L C  H+  C  GIP  D
Sbjct: 523 HSKAHSAPAAAAE--HFSASPRKCDNDTLGCSNHEDACQTGIPSND 566


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +2

Query: 311 NCVTTEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLED 466
           N ++ +  TI +  NF+ EK+    K+  G   +N+ K++ E   + N+L+D
Sbjct: 499 NSISLQVETIEDKTNFMPEKFSELEKVYTGCEKLNNKKEEQEENDKINTLKD 550


>03_01_0567 +
           4186620-4186694,4186766-4186852,4187293-4187932,
           4188009-4188094,4189620-4190010,4190102-4190172,
           4190738-4190856,4191517-4191793
          Length = 581

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 116 KRNFKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMIKG 256
           +R+  H   D  +  P Q   + +FGS++  ++   + S +EN + G
Sbjct: 255 RRDASHYNGDSSIGAPVQNLTDAYFGSRRSFSSTMDIMSQLENKVDG 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,426,957
Number of Sequences: 37544
Number of extensions: 314533
Number of successful extensions: 715
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)