Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C01
(566 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 173 8e-44
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075) 33 0.22
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) 29 2.0
SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7) 28 4.6
SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_28271| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14) 27 8.1
SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_23500| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 173 bits (421), Expect = 8e-44
Identities = 75/128 (58%), Positives = 102/128 (79%)
Frame = +2
Query: 14 MKXIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFG 193
MK I+A++ V IP+++ V VKSR+VTV GPRG LKRNF+HL +++ V +++V+ WF
Sbjct: 557 MKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFA 616
Query: 194 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKY 373
S+KELA V+T+ +H+ENMIKGV G++YKMRAVYAHFPIN E T++E+RNFLGEKY
Sbjct: 617 SRKELACVKTIITHIENMIKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKY 676
Query: 374 IRRVKMAP 397
+RRV+M P
Sbjct: 677 VRRVRMRP 684
>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = +2
Query: 482 ALIQQSTTVKNKDIRKFLDGLYVSEKTT 565
ALIQQST VKNKDIRKFLDG+YVSEKTT
Sbjct: 2 ALIQQSTKVKNKDIRKFLDGVYVSEKTT 29
>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
Length = 762
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +2
Query: 329 GNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ--KDELIIEGNSLEDVSSSAALIQQST 502
G ++ +++ LG++ + T + K+EL +SLE+VS A +Q S
Sbjct: 196 GREVVRLKDELGKQASNELSFIAKTTELEDQLVLLKEELNSRVSSLENVSKQLAELQSSA 255
Query: 503 TVKNKDIRKFLDGLYVSEK 559
K+++I L V+EK
Sbjct: 256 LTKDEEISSLTKRLQVTEK 274
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 29.5 bits (63), Expect = 2.0
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Frame = +2
Query: 116 KRNFKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQY-KMRAV 292
KR H+ + +N ++ +K K+ LAA + V + N+ KGVT+G K R V
Sbjct: 924 KRKLTHV---VDGINTKKELRKKQEDMKRALAAAKVVKTERVNVAKGVTQGMPVTKGRVV 980
Query: 293 YAHFPI--NCVTTEGNTIIE-IRNFLGEKYIRRVKMAPGVTVVNS-PKQKDELIIEG 451
PI V T+G + + + G + + + PG V P + ++ +G
Sbjct: 981 TQGMPITPGRVVTQGKVVTQGMPVTPGRVVTQGIPVTPGRIVTQGIPVTQGRVVTQG 1037
>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
Length = 1152
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 368 KYIRRVKMAPGVTVVNSPKQKDELIIE-GNSLEDVSSSAALIQQSTTVKNKDIRKFLDGL 544
K R ++A G+ ++P Q + LI G EDV S+ +L + + + KF DG
Sbjct: 25 KRFERFRIASGLDKKDAPSQINALIYTMGERAEDVLSTFSLTEAESKDYKVVVEKF-DGH 83
Query: 545 YVSEKTT 565
+V ++ T
Sbjct: 84 FVKKRNT 90
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 71 VKSRLVTVKGPRGVLKRNFKHL 136
V++R TV PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090
>SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -3
Query: 489 IRAAELDTSSNEFPSMISSSFCLGELTTVTPGAIFTLLMYFSPRKLRIS 343
I AAE+ TS + S S CL VT IFT MY PR++ ++
Sbjct: 232 ISAAEVKTSRIFLLVINSFSICLAPFMIVTFIEIFTGTMYTVPRQVYLA 280
>SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7)
Length = 535
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/84 (21%), Positives = 36/84 (42%)
Frame = +2
Query: 311 NCVTTEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALI 490
N E + ++R + + I+ GV V++ K E + + + E + L
Sbjct: 256 NLTQDERRALKDLR-YAKDIVIKEADKGSGVVVMDKDKYNQEALRQLSDKEVYKETKDLT 314
Query: 491 QQSTTVKNKDIRKFLDGLYVSEKT 562
Q T + N+ +RK ++ +KT
Sbjct: 315 QYITELVNRRVRKLSSDGFIDDKT 338
>SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = -2
Query: 412 DNCHTRCHFYPPDVLFTKEVTDLNNCVSLSGDTVDREMSVHCTHLVLESLG 260
D + H Y D + + +L V+ S +V S+H T+++ +LG
Sbjct: 363 DRLNDTLHHYETDPKYHRLFIELTPYVNHSAPSVQENFSLHRTYIIFRTLG 413
>SB_28271| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)
Length = 686
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 447 SMISSSFCLGELTTVTPGAIFTLLMYFSPRKLRISIIVFPSVVTQLIG 304
SMISS + LTT+T ++ F R+L+ + V+ +V L G
Sbjct: 83 SMISSEVSVLILTTITADRFACIVFAFKFRRLKFNTAVYIAVSIWLFG 130
>SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 803
Score = 27.5 bits (58), Expect = 8.1
Identities = 30/134 (22%), Positives = 53/134 (39%)
Frame = +2
Query: 161 PRQLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTI 340
P K W K A+ +E I TK Q K +Y+ N E +
Sbjct: 444 PAFRKKSSWCPEKGREIAIEAYAKALEEEILSSTK--QGK---IYS----NLTQDERRAL 494
Query: 341 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 520
++R + + I+ GV V++ K E++ + + E + L Q T + N+
Sbjct: 495 KDLR-YAKDIVIKEADKGSGVVVMDKDKYIQEVLRQLSDKEVYKETKDLTQYITELVNRR 553
Query: 521 IRKFLDGLYVSEKT 562
+RK ++ +KT
Sbjct: 554 VRKLSADGFIDDKT 567
>SB_23500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 27.5 bits (58), Expect = 8.1
Identities = 30/134 (22%), Positives = 52/134 (38%)
Frame = +2
Query: 161 PRQLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTI 340
P K W K A+ +E I TK Q K +Y+ N E +
Sbjct: 123 PAFRKKSSWCPEKSREIAIEAYAKALEEEILSSTK--QGK---IYS----NLTQDERQAL 173
Query: 341 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 520
++R + + I+ GV V++ K E + + + E + L Q T + N+
Sbjct: 174 KDLR-YTKDIVIKEADKGSGVVVMDKDKYIQEALRQLSDKEVYKETKDLTQYITELVNRR 232
Query: 521 IRKFLDGLYVSEKT 562
+RK ++ +KT
Sbjct: 233 VRKLSADGFIDDKT 246
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,166,613
Number of Sequences: 59808
Number of extensions: 390321
Number of successful extensions: 959
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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