Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C01
(566 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos... 213 5e-56
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim... 213 5e-56
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil... 213 5e-56
At1g05190.1 68414.m00523 ribosomal protein L6 family protein Sim... 39 0.003
At3g58060.1 68416.m06472 cation efflux family protein / metal to... 31 0.71
At1g76660.1 68414.m08920 expressed protein 30 1.2
At3g26930.1 68416.m03369 hypothetical protein 28 5.0
At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase fa... 27 6.6
At3g20700.1 68416.m02619 F-box family protein-related contains T... 27 8.7
At1g69810.1 68414.m08032 WRKY family transcription factor 27 8.7
>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
ribosomal protein L9, cytosolic - garden pea,
PIR2:S19978
Length = 194
Score = 213 bits (521), Expect = 5e-56
Identities = 101/187 (54%), Positives = 136/187 (72%), Gaps = 5/187 (2%)
Frame = +2
Query: 14 MKXIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RQLKV 178
MK I++++ + IP+ + + V ++++ V+GPRG L R+FKHL +D +++ RQLK+
Sbjct: 1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60
Query: 179 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNF 358
+ WFGS+K A++RT SHV+N+I GVT+GF Y+MR VYAHFPIN N IEIRNF
Sbjct: 61 DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120
Query: 359 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLD 538
LGEK +R+V+M GV +V S K KDE+I+EGN +E VS S ALI Q VK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180
Query: 539 GLYVSEK 559
G+YVSEK
Sbjct: 181 GIYVSEK 187
>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
[Arabidopsis thaliana]
Length = 194
Score = 213 bits (521), Expect = 5e-56
Identities = 99/188 (52%), Positives = 140/188 (74%), Gaps = 5/188 (2%)
Frame = +2
Query: 14 MKXIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RQLKV 178
MK I++++ + IP+S+T+ V ++++ V+GPRG L R+FKHL +D +++ ++LK+
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 179 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNF 358
+ WFG++K A++RT SHV+N+I GVT+GF+YKMR VYAHFPIN IEIRNF
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120
Query: 359 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLD 538
LGEK +R+V+M GVT+V S K KDE++++GN +E VS S ALI Q VK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180
Query: 539 GLYVSEKT 562
G+YVSEK+
Sbjct: 181 GIYVSEKS 188
>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
thaliana]
Length = 194
Score = 213 bits (521), Expect = 5e-56
Identities = 99/188 (52%), Positives = 140/188 (74%), Gaps = 5/188 (2%)
Frame = +2
Query: 14 MKXIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RQLKV 178
MK I++++ + IP+S+T+ V ++++ V+GPRG L R+FKHL +D +++ ++LK+
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 179 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNF 358
+ WFG++K A++RT SHV+N+I GVT+GF+YKMR VYAHFPIN IEIRNF
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120
Query: 359 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLD 538
LGEK +R+V+M GVT+V S K KDE++++GN +E VS S ALI Q VK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180
Query: 539 GLYVSEKT 562
G+YVSEK+
Sbjct: 181 GIYVSEKS 188
>At1g05190.1 68414.m00523 ribosomal protein L6 family protein
Similar to Mycobacterium RlpF (gb|Z84395). ESTs
gb|T75785,gb|R30580,gb|T04698 come from this gene
Length = 223
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/86 (24%), Positives = 45/86 (52%)
Frame = +2
Query: 26 VANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGSKKE 205
+ Q + +P ++T+ ++ + + VKGP G L + V++ L+V+K +++
Sbjct: 46 IGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPR-EVELTKEESGFLRVKKTVETRRA 104
Query: 206 LAAVRTVCSHVENMIKGVTKGFQYKM 283
+ +NM+ GV+KGF+ K+
Sbjct: 105 NQMHGLFRTLTDNMVVGVSKGFEKKL 130
>At3g58060.1 68416.m06472 cation efflux family protein / metal
tolerance protein, putative (MTPc3) member of the cation
diffusion facilitator (CDF) family, or cation efflux
(CE) family, PMID:11500563
Length = 411
Score = 30.7 bits (66), Expect = 0.71
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 352 TDLNNCVSLSGDTVDREMSVHCTHLVLESLGHTFDHVFDMRAY 224
T + N VSL G + E+ T+LV+ G HV +RAY
Sbjct: 302 TVMENAVSLIGQSAPPEVLQKLTYLVMRQGGDNIKHVDTVRAY 344
>At1g76660.1 68414.m08920 expressed protein
Length = 431
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -2
Query: 250 DHVFDMRAYCPNSS*FFFRTEPFLHFQLARINHANVNSQVFEVSF*NSARTF--HCHQTR 77
D F+ AY P+ R E L Q + + A+++SQV + S+ ++ H + R
Sbjct: 323 DGSFNTSAYSPSDGQKLLRREANLLSQTSPKSEADLDSQVVDFQSPKSSNSYKDHKQRNR 382
Query: 76 FHMDGETL 53
H D E L
Sbjct: 383 IHADEEAL 390
>At3g26930.1 68416.m03369 hypothetical protein
Length = 409
Score = 27.9 bits (59), Expect = 5.0
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -3
Query: 339 IVFP--SVVTQLIGK*AYTARILYWNPLVTPLIMFST*EHTVLTAASSFL-EPNHFSTFN 169
I FP S+ QL+ YT + +WN LV L++ S+ + VL E NH ++ N
Sbjct: 254 IKFPTGSIFYQLVSLELYTNKAEWWNLLV--LMLDSSPKLQVLKLNGKLSGENNHLASMN 311
Query: 168 W 166
W
Sbjct: 312 W 312
>At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
musculus} SP|P70704, {Bos taurus} SP|Q29449; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1107
Score = 27.5 bits (58), Expect = 6.6
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +2
Query: 362 GEKYIRRVKMAPGVTVVNSPKQKDELI-IEGNSLEDVSSS---AALIQQSTTVKNKDIRK 529
G+K +++A + SP+ K +L+ I+G + EDVS S L + T + KD+
Sbjct: 637 GDKQNTAIQIALSCNFI-SPEPKGQLLMIDGKTEEDVSRSLERVLLTMRITASEPKDVAF 695
Query: 530 FLDG 541
+DG
Sbjct: 696 VIDG 699
>At3g20700.1 68416.m02619 F-box family protein-related contains
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 326
Score = 27.1 bits (57), Expect = 8.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 106 ARTFHCHQTRFHMDGETLRNLHLLVCN 26
++ FHC+ + G+T+ + L+VCN
Sbjct: 67 SQVFHCNGLLLSVSGKTIDDTRLVVCN 93
>At1g69810.1 68414.m08032 WRKY family transcription factor
Length = 387
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 451 KLIRRCIQFSCPDPTIND 504
K R C++ SC DP+IND
Sbjct: 187 KKTRVCVKASCEDPSIND 204
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,671,179
Number of Sequences: 28952
Number of extensions: 262870
Number of successful extensions: 683
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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