Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B22
         (93 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38337| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.5  
SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29)           25   9.9  

>SB_38337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = -1

Query: 90 SVILVSVYLSPRDSILLSDLGE 25
          S+ +VS+YL  RD+++L++L E
Sbjct: 10 SLGVVSMYLPSRDNVILTELAE 31


>SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29)
          Length = 690

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 17 KKASPRSDNKILSLGERYTDTSMTD 91
          KKA PR     LS  + +TDT  T+
Sbjct: 13 KKAKPRQQESTLSKEQAWTDTDDTE 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,533
Number of Sequences: 59808
Number of extensions: 22421
Number of successful extensions: 64
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 16,821,457
effective HSP length: 11
effective length of database: 16,163,569
effective search space used: 307107811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)